Conserved Protein Domain Family
RRM_SR140

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cd12223: RRM_SR140 
RNA recognition motif (RRM) found in U2-associated protein SR140 and similar proteins
This subgroup corresponds to the RRM of SR140 (also termed U2 snRNP-associated SURP motif-containing protein orU2SURP, or 140 kDa Ser/Arg-rich domain protein) which is a putative splicing factor mainly found in higher eukaryotes. Although it is initially identified as one of the 17S U2 snRNP-associated proteins, the molecular and physiological function of SR140 remains unclear. SR140 contains an N-terminal RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain), a SWAP/SURP domain that is found in a number of pre-mRNA splicing factors in the middle region, and a C-terminal arginine/serine-rich domain (RS domain).
Statistics
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PSSM-Id: 409670
Aligned: 15 rows
Threshold Bit Score: 140.121
Created: 21-Sep-2011
Updated: 25-Oct-2021
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
O15042        273 TTNLYLGNINPqmnEEMLCQEFGRFGPLASVKIMWPRTDEERar------------eRNCGFVAFMNRRDAERALKNLNG 340  human
NP_611535     214 TTNLYLGNLNPkisEQQLMEIFGRYGPLASIKIMWPRSEEEKqr------------gRNCGFVAYMSRKDAERALKTLNG 281  fruit fly
NP_568464     178 TTNLYVGNLSPkvdENFLLRTFGRFGPIASVKIMWPRTDEEKrr------------qRNCGFVSFMNRADGQAAKDEMQG 245  thale cress
XP_002107608  200 TTNLYVGNLNPsidEDYLCKLFGEYGALASVKIMWPRTDEEKkr------------nRNCGFVAFMTRTDGDKALRALNG 267  Trichoplax ad...
XP_002296174   13 TTNIFVGNLDPmstEEELTDVFRQFGDLYSVKIMWPRTAEERsr------------nRNTGFVCFMSRADAEDAMDALSD 80   Thalassiosira...
EGO25376      187 TSNVFVANLPSnvtEQSLGNFFARSGPVGSVKIMWPRGDPTVgpggdmttsrrnrnsGLSGFVSFMKRKDAENALREFDG 266  Serpula lacry...
CBY24516       52 STNIFIASLSNrctEEDVTHYFGRFGPLVSVKIMYPRTQEEKfk------------dRNCAFVAYCCRNDAERAMSKLQN 119  Oikopleura di...
EEY54549      179 TTNLYVGNLAPtvtEEVLQAEFGRYGEVYSVKIMWPRSEEERar------------kRNCGFVSFYERRDADDARVNLDN 246  Phytophthora ...
EDQ91233      144 TTNLYVNNLPTtfkEDLLAQLFGVHGPLASVKIMWPRHPSEVr-------------dNLCGFVAFMRRADAQRALEKLNG 210  Monosiga brev...
EEH54406      170 STNIHVRNLPLdfnENVLLRRFERFGPIGSVKIYWPRPEDLRyv------------kALSGFVAFMTHADAARAIEETDG 237  Micromonas pu...
O15042        341 kmi--msFEMKLGWGKAV 356  human
NP_611535     282 ryi--mgYEMRLGWGKTV 297  fruit fly
NP_568464     246 iiv--yeYELKIGWGKAV 261  thale cress
XP_002107608  268 kei--meYELHVGWGKAV 283  Trichoplax adhaerens
XP_002296174   81 adpldtgRRLKLGWGKNV 98   Thalassiosira pseudonana CCMP1335
EGO25376      267 ydw--ngSVLRVGWSKAV 282  Serpula lacrymans var. lacrymans S7.9
CBY24516      120 ndf--kgVDLKLGWGKAV 135  Oikopleura dioica
EEY54549      247 kql--egQPMIVGWGKAV 262  Phytophthora infestans T30-4
EDQ91233      211 alv--egHDIKTGWAKAV 226  Monosiga brevicollis MX1
EEH54406      238 vvv--ggNDLRVGWGKAV 253  Micromonas pusilla CCMP1545
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