2FBJ,1IGA


Conserved Protein Domain Family
IgC1_CH1_IgA

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cd21818: IgC1_CH1_IgA 
Click on image for an interactive view with Cn3D
CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin heavy alpha chain; member of the C1-set of Ig superfamily (IgSF) domains
The members here are composed of the first immunoglobulin constant-1 set domain of alpha chains. It belongs to a family composed of the first immunoglobulin constant-1 set domain of alpha, epsilon, gamma, and mu heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each is composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) with three (alpha, delta and gamma) or four (epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. This group belongs to the C1-set of IgSF domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules, and in various T-cell receptors.
Statistics
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PSSM-Id: 409623
Aligned: 5 rows
Threshold Bit Score: 146.111
Created: 14-May-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Comment:Dimerization of Ig domains from different chains is common, but not found in all members.
  • Structure:2FBJ; mouse IgA Fab, heavy and light chain -IgC interface, based on 4A distance
    View structure with Cn3D
  • Citation:PMID 9145108

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #####         #   # #                    # # ## ##         # #              
2FBJ_H    123 NPTIYPLTLppalssdpVIIGCLIHDYFPsgTMNVTWGKSGk-dITTVNFPPALas-gGRYTMSNQLTLPAvecpegeSV 200 house mouse
1IGA_A    127 SPKVFPLSLcstqpdgnVVIACLVQGFFPqePLSVTWSESGq-gVTARNFPPSQdasgDLYTTSSQLTLPAtqclagkSV 205 human
AAD21190  143 SPTVFPMSLcdsrtgdsVALGCLAQGFFPe-PVTLSWNYNGs-eGTVRSYPAMLs--gNTYLQTSVLDLPAnqc--peAY 216 gray short-tailed ...
AAD41690   60 SPRLFPLSSfysetsdsIVLGCLAYGFFPe-PVDMTWDYSGs-gGTVRNYPAMLi--gDAYTQASVLDLPAdqcsntqAY 135 silver-gray brusht...
AAN33012  145 TPTVFPLSAyqsnsedpVSIGCLVTGYFPe-PVEVTWNNQNkdgSTARTFPAVLes-sGYYVLSSLLVLPAdqcpeskAY 222 Australian echidna
Feature 1                       
2FBJ_H    201 KCSVQHdsnpvQELDVNC 218 house mouse
1IGA_A    206 TCHVKHytnpsQDVTVPC 223 human
AAD21190  217 KCRAEHyn-tsVDANVPC 233 gray short-tailed opossum
AAD41690  136 ECQVQHyd-tsANLTVPC 152 silver-gray brushtail possum
AAN33012  223 QCKVNHyg-ssRTANVDC 239 Australian echidna

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