Conserved Protein Domain Family
CH_SYNE1_rpt1

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cd21241: CH_SYNE1_rpt1 
first calponin homology (CH) domain found in synaptic nuclear envelope protein 1 and similar proteins
Synaptic nuclear envelope protein 1 (SYNE-1), also called nesprin-1, enaptin, KASH domain-containing protein 1 (KASH1), myocyte nuclear envelope protein 1 (MYNE-1), or nuclear envelope spectrin repeat protein 1, is a multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain subcellular spatial organization. SYNE-1 also acts as a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex, which is involved in the connection between the nuclear lamina and the cytoskeleton. SYNE-1 contains two copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409090
Aligned: 16 rows
Threshold Bit Score: 225.331
Created: 9-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #   #                                                       # ##  ## #     
Q8NF91         24 EQEIVQKRTFTKWINSHLAKr--kPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRrMKRIHAVANIGTALKFLEG 101  human
XP_002613221   87 EQEEVQKRTFTNWINSHLMKh--dPPLKVQSICDEFKDGIKLLALLEVLSGEKLPCEKGRhLKRLHHLTNIQTALQYLEA 164  Florida lancelet
XP_006824848   20 EQERVQKKTFTNWMNSVLAKh--tPPQHVDDIFVDIRDGTKLLALLESLSGESLKYEKGKnLRRLHFLSNIRTALAFLEG 97   Saccoglossus ...
KFM65658       83 EQERVQKKVFTNWTNHYLAQh--ePPLRVEDLIEDLRDGAKLIALIEHLSGERLHCEKGRrLRRPHFLSNVNQVLQFLER 160  Stegodyphus m...
AAN62853        1 EQERVQKKTFTNWINSYLLKr--vPPLRIDDLINDLRDGTKLIALLEVLSGERLPVEKGRvLRRPHFLSNANTALQFLAS 78   fruit fly
XP_022095661   26 EQERVQTKTFTNWVNSHLRSskrkPLIQVVDLCVDVKDGIVLLTLLEVLSGETLPFEKGRnMKRVHFLSNVNTCLRFLEG 105  crown-of-thor...
TRY77985      663 EQERVQKKTFVNWINSYLAKr--iPPMKIEDLADGLRDGTRLLALLEVLGGERLPMEKGRvLRRPHYLSNVNTALEYLRS 740  Tigriopus cal...
PAA66447       17 EQERVQKKTFTNWINTYLIQc--qPPCKIADLFPEVKDGIKLLLLLEVLSGQKLPHESRKvMQRVHCLSNVRTALSFLES 94   Macrostomum l...
CDQ67487       28 EQEAVQKRTFTKWINSHLTKr--kPPLEVTDLFEDIKDGVKLLALLEVLSGQRLPCEQGRqLKRIHWVSNIGTALRFLEG 105  rainbow trout
TFK07968       28 EQEAVQKRTFTKWINTHLAKr--nPPLVVNDLFEDIKDGVMLLALLEVLSGQKLPCEQGRhLKRIHWVANIGSALKFLEG 105  big-headed tu...
Feature 1                   #########    # ## ##  ##  #     
Q8NF91        102 RK-------IKLVNINSTDIADGRPSIVLGLMWTIILYFQIE 136  human
XP_002613221  165 RN-------IKLVNINPSDVADGKPTIVLGLVWTIILRFQIE 199  Florida lancelet
XP_006824848   98 KK-------IKMVNINASDIVDGKPSIVLGLVWTIILYYQIE 132  Saccoglossus kowalevskii
KFM65658      161 KR-------IKLVNINATDIVDGKPAITLGLIWTIILHFQIE 195  Stegodyphus mimosarum
AAN62853       79 KR-------IKLVNINPADLVDGRPPVVLGLIWTIILYFQIE 113  fruit fly
XP_022095661  106 KK-------IKLVNINASDIIDGKPPIVLGLVWTIILYYQIE 140  crown-of-thorns starfish
TRY77985      741 KR-------IKLVNINAADVVDGRPAVVLGLIWTIILYFQIE 775  Tigriopus californicus
PAA66447       95 KK-------IKLVNINPADIVDGKPSIVLGLIWTIILYFQIE 129  Macrostomum lignano
CDQ67487      106 RKsvyrgspIKLVNIHATDIADGRPSIVLGLIWTVILYFQIE 147  rainbow trout
TFK07968      106 RR-------IKLVNINSTDIADGRPSIVLGLMWTIILYFQIE 140  big-headed turtle

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