Conserved Protein Domain Family
CH_DYST_rpt1

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cd21236: CH_DYST_rpt1 
first calponin homology (CH) domain found in dystonin and similar proteins
Dystonin, also called 230 kDa bullous pemphigoid antigen, 230/240 kDa bullous pemphigoid antigen, bullous pemphigoid antigen 1 (BPA or BPAG1), dystonia musculorum protein, or hemidesmosomal plaque protein, is a cytoskeletal linker protein that acts as an integrator of intermediate filaments, actin, and microtubule cytoskeleton networks. It is required for anchoring either intermediate filaments to the actin cytoskeleton in neural and muscle cells, or keratin-containing intermediate filaments to hemidesmosomes in epithelial cells. Dystonin contains two copies of the CH domain. This model corresponds to the first CH domain. CH domains are actin filament (F-actin) binding motifs.
Statistics
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PSSM-Id: 409085
Aligned: 5 rows
Threshold Bit Score: 252.598
Created: 9-Oct-2019
Updated: 25-Oct-2021
Structure
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Aligned Rows:
 
putative actin
Feature 1:putative actin binding site [polypeptide binding site]
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens filamin-A binds F-actin.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                            #   #                                                        
Q03001         20 QAYEDVLer--ykDERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---------------- 81   human
CDQ61337       79 QAYEDVLek--ykDERDRVQKKTFTKWINQHLLKVRKHVNDLYEDLRDGHNLISLLEVLSGQSL---------------- 140  rainbow trout
EMP35716       43 QMGTNVIpvlhnyDERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---------------- 106  Green sea turtle
OCT80549      105 QTGSTVFmgv-aaDERDKVQKKTFTKWINQHLMKVRKHVNDLYEDLRDGHNLISLLEVLSGDTL---------------- 167  African clawe...
XP_007892259   23 QAYENVLer--ykDERDKVQKKTFTKWINKHLIKVRKHVNDLYEDLRDGHNLISLLEALSGDTLprerdilktlrlvsaa 100  elephant shark
Feature 1                                 # ##  ## #        #########    # ## ##  ##  #           
Q03001         82 ---------------PREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIsDIHVTG 146  human
CDQ61337      141 ---------------PREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQV-RVHLKS 204  rainbow trout
EMP35716      107 ---------------PREKGRMRFHRLQNVQIALDYLKKRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQL-DFWLIV 170  Green sea turtle
OCT80549      168 ---------------PREKGRMRFHRLQNVQIALDYLKKRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIsDIHVTG 232  African clawe...
XP_007892259  101 eacacdqhedgddkgPREKGRMRFHRLQNVQIALDYLKRRQVKLVNIRNDDITDGNPKLTLGLIWTIILHFQIsDIHVTG 180  elephant shark
Feature 1          
Q03001        147 E 147  human
CDQ61337      205 H 205  rainbow trout
EMP35716      171 K 171  Green sea turtle
OCT80549      233 E 233  African clawed frog
XP_007892259  181 E 181  elephant shark

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