2RPZ,5TKM,5Z98


Conserved Protein Domain Family
NAD1

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pfam18778: NAD1 (this model, PSSM-Id:408549 is obsolete and has been replaced by 465865)
Novel AID APOBEC clade 1
A distinct family of AID/APOBEC-like deaminases found in ray-finned fishes, the coelacanth, amphibians, lizards, and marsupials.
Statistics
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PSSM-Id: 408549
Aligned: 39 rows
Threshold Bit Score: 125.072
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2RPZ_A         8 RLPVNFFKFQFRNVEYSS---GRN---KTFLCYVVEVQskGGQAQATQ--G-YL-EDeHAG-A-----HAEEAF--FNTI 69 
XP_006025452  51 EFHKA-FGFPYGQMT------PQN---KHIIFYELR-----NSSSMLVqkG-HA-TN-----CieyniHPESVLfeLGGY 108 Chinese alligator
XP_003999306  46 SEFYQIFGFPYGPAY------PQT---KHLTFYELK-----TSSGSLVqkG-HA-SS-----CtgnntHPESMLfeMNGY 104 domestic cat
XP_024204018  29 RIEPWEFDVFYDPRE------LRK---EACLLYEIKw---gMSRKIWRssGkNT-TN-----------HVEVNF--IKKF 82  chimpanzee
P38483        17 RIEPHEFEVFFDPRE------LRK---ETCLLYEINw---gGRHSIWR----HT-SQnTNK-------HVEVNF--IEKF 70  Norway rat
OCT92600       8 LVSFEDFNGNFNNIG------QVH---KTLACFNLG-----NETPLWKhwG-FAyNNpNSD-------HAEQII--LQEL 63  African clawed ...
XP_003765824   8 EISEEEFYEHFCNIK------TPH---QTLLCFSLKe----DDKTLWKlwG-HA-YN-NPGq-----yHAEILV--LREI 64  Tasmanian devil
XP_007501436   8 EISEEEFHRNFSSTK------ASH---QTLLCFGLKe----EDKTLWKlwG-HA-YN-NPGqC-----HAEILV--LREI 64  gray short-tail...
XP_012363142   3 LLTAKTFRLQFNNKRRVTkpyYPR---KALLCYQLT-P--QNGSTPTR--G-YF-KN-----Kkk--rHAEIRF--INKI 63  northern white-...
5Z98_A         5 LLTAETFRLQFNNRRRLR---RPYyprKALLCYQL-TP--QNGSTPTR--G-YF-EN-KKK-C-----HAEICF--INEI 65 
2RPZ_A        70 ---LPAF--DPAL---KYNVTWYVSSSPC---AAC-ADRILKTLSKTKN-LRLLILVSRLFMWE-EP-----EVQAALKK 130
XP_006025452 109 l-dSVTY--RYDS---IGYIILYSNYSPCneaDHCcISKIYNFLTKYPD-IILCIYFSQLYHTE-DDfpvsaWNREALRS 180 Chinese alligator
XP_003999306 105 l-dSAIR--NNNA---IRHIILYSSNSPCneaDHCcISKMYNFLIMYPD-VTLSIYFSQLYHTE-PEfpasaWNREALRS 176 domestic cat
XP_024204018  83 t-sERHF--HPSI---SCSITWFLSWSPC---WEC-SQAIREFLSQHPG-VTLVIYVARLFWHMdQQ------NRQGLRD 145 chimpanzee
P38483        71 t-tERYF--CPNT---RCSITWFLSWSPC---GEC-SRAITEFLSRYPH-VTLFIYIARLYHHA-DP-----RNRQGLRD 133 Norway rat
OCT92600      64 ytfLGL---DQSNislKYKLNLYTSYSPC---FSC-CKDLCSFLDTYKNqVSMHLKIAKLYKFY-DS-----NNQRGLQM 130 African clawed ...
XP_003765824  65 e-dYLM---ANILnatKYTITWFLSYSPC----HCcCDEITNFLMKFQIkIEFNIKAARPYYFDnDK------NQKGLKI 130 Tasmanian devil
XP_007501436  65 e-nYLMTniPNAA---KYNITWFLSYSPC---HSC-CDKIINFFMNSQTkIEFNIKAAKPYQFSnDQ------NPKGIKM 130 gray short-tail...
XP_012363142  64 k-sMGL---DETQ---CYQVTCYLTWSPC---PSC-AQELADFIKAHDH-LNLRIFASRLYCHWcRR------QQEGLRL 125 northern white-...
5Z98_A        66 k-sMGL---DETQ---CYQVTCYLTWSPC---SSC-AWKLVDFIQAHDH-LNLRIFASRLYYHW-CK-----PQQEGLRL 127
2RPZ_A       131 LKE-AG-CKLRIMKPQDFEYIWQNFVEQE----EgesKAFEPW---ED--IQENFLYYEEKLADIL 185
XP_006025452 181 LASlWPhMTLHPLCGR----MWHSLLC-----------NFVSN-------IPEATFYYPVLPARAL 224 Chinese alligator
XP_003999306 177 LASlWPqVILSPISGS----IWHSLLNNF-----------------------------VSGISGST 209 domestic cat
XP_024204018 146 LVN-SG-VTIQIMRASEYYHCWRNFVNYL----P---GDEAHW---PQypPLW-MMLYALELHCII 198 chimpanzee
P38483       134 LIS-SG-VTIQIMTEQESGYCWRNFVNYS----P---SNEAHW---PRypHLW-VRLYVLELYCII 186 Norway rat
OCT92600     131 LRE-NG-ADITIMDLEDYKECFYLFVSPTd--------TFQPC---PD--LN-HYSYGNARDMDLL 180 African clawed frog
XP_003765824 131 LKK-LG-VLIKMMDFTDYEECLYLFVDPC--------MKFTAW---PD--LEVQSIANKMIFHHLF 181 Tasmanian devil
XP_007501436 131 LNK-LG-ILFKMMEYSDFEECFYLFVDPC--------TKFTAW---PD--LEA-QSIANITLSHHL 180 gray short-tailed opossum
XP_012363142 126 LCG-SQ-VPVEVMGFSEFADCWENFVDYEeplsF---NPSEML---EE--LDKNSRAIKRRLEKIK 181 northern white-cheeked gibbon
5Z98_A       128 LCG-SQ-VPVEVMGLPEFNDCWENFVDHEk---P---LSFDPCkmlEE--LDKNSRAIKRRLERIK 183
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