5MRG


Conserved Protein Domain Family
TDP43_N

?
pfam18694: TDP43_N (this model, PSSM-Id:408471 is obsolete and has been replaced by 465833)
Click on image for an interactive view with Cn3D
Transactive response DNA-binding protein N-terminal domain
This domain can be found at the N-terminal region of transactive response DNA-binding protein 43 kDa (TDP-43), an RNA transporting and processing protein whose aberrant aggregates are implicated in neurodegenerative diseases. TDP-43 N-terminal domain has been shown to play an important role in the aggregation of TDP-43 monomers and its loss of function affects the RNA metabolic levels. Secondary structure of the N-terminal domain consists of six beta-strands and it resembles axin 1.
Statistics
?
PSSM-Id: 408471
Aligned: 68 rows
Threshold Bit Score: 61.0369
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
5MRG_A     16 YIRVTE-DENdEPIEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVSQCMRGVRLVEGILHA--PDA-G-WGN-LVYVVNY 89   human
KRX58292   67 VVQVST-----GVLECPLEKDGTLSLATLRSLLPGARGLWYKP---SEYKPIQSTENRQNLyhPIKdGvIEYiTSVFVIe 138  Trichinella sp. T9
KFD62873  111 VVLVSS-----GILECPLERDGTLALSTLQSQLPCARGLWYNVDDGESRRAIRFNGTTATFspPRD-G-WKD-KVHYVSF 182  pig whipworm
VDM63961   20 RLQI-------EPVEVATD-EGGIVFSSVQSVVPGAHGLYYRE--GGQRRPLEYDNNTGKIlaPAS-G-WSA-QDIYIHL 86   Angiostrongylus c...
VDD93332   22 RVYI-------EPVDLELENDGSLLITSLQSALPGASGIYFKL---DCKKSLKFDGKKLYP--PND-G-WQN-RRYYIKN 86   human pinworm
VDK42596   14 TVYV-------EPIEIELDDDGNLLFSALQSAVPGASGLYFRG---ECKSSVKFDGKKLIA--PAD-G-WKD-RKYFANL 78   herring worm
VDN52368    8 QLQIKNqLVG-EPVEVELDDDGALLISALQSALPGASGLYFNE---NCKSSVKFDGKKLIP--PAG-G-WKD-RKYFATL 78   Guinea worm
EYB98056   56 RVSV-------EPAEVELDEDDGLLWTSLQTAFPGCSGMYYRERDSDCRSSVKFDGKKFLP--PGG-A-WND-RDYYVTL 123  Ancylostoma ceyla...
KJH47441    7 RVFV-------EAADIELDDDGSLLWATLQTAFPGCSGMYYRDGDVDCRTAVKFDGQRFFP--PGG-A-WND-RRYYVTL 74   bovine lungworm
VDN04485    3 RVHV-------QPVDIELDQESSILITTLQAALPGAVGLYYYD--SDCKACVAFDGKKFLV--PNG-G-WKE-RTYYAIL 68   thelaziosis nematode
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap