Conserved Protein Domain Family
Integrase_H2C2

?
pfam17921: Integrase_H2C2 (this model, PSSM-Id:407771 is obsolete and has been replaced by 465569)
Integrase zinc binding domain
This zinc binding domain is found in a wide variety of integrase proteins.
Statistics
?
PSSM-Id: 407771
Aligned: 587 rows
Threshold Bit Score: 30.6931
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_003646765   1138 VPRSKVQEVLNIYHDHfltGGHFGIEATYNKIALYYYWPKMSRDVKEYVRTCTDCQIRKHH 1198 Eremothecium cymbalariae DBVPG...
KNE88915        159 VPVSHRERIIQFHHDAp-tTGHPGIARTLSLLTRSFSWPGIRKDVIQFVKSCDSCQRVKAR 218  Puccinia striiformis f. sp. tr...
KNE95757        721 ADDSIKTSILKSRHDSk-lAGHPSRAKTLALTRRSFTWPSQKKFVNQYVDGCDSCQRVKAS 780  Puccinia striiformis f. sp. tr...
188_pfamImport    1 VPQALTPRVLHEHHDSp-yAGHPGSDETLRATQQLYWWPKMRGDIRNHVRQCMLCACNKAG 60  
KXZ75609        599 VPAGIKERVLFEHHDAt-lAGHPGADESERLIRNNFHWPSLRQDVRDYVSTCLLCARFKKR 658  red flour beetle
28_pfamImport     1 VPTDVRARVLYYYHDAe-lAGYPGAEETLRVIQVHYWWKGMQQEIREYVQLCHICACAKKS 60  
40_pfamImport     1 VPNNIRTRLLTHIHDTp-sSGHPGITATLELVKARFWWPSLTKDVINYVQKCKICQSTKAS 60  
69_pfamImport     1 VPPSVRARVIHWLHTSk-fSAHPGISRTIALASRRFWWPSLHKDIKEYVLACPICARNKPS 60  
OAJ44613       1096 VPKSCYAAVLHSCHDVl-aVGHPGIRRTLNLVSRKFWWPTMRADTKNYVSTCDTCARAKVP 1155 Batrachochytrium dendrobatidis...
CUA74182        701 NELQIRKAVIESRHDNp-sAGHPGQFRTLDLLSRTYYWKGMKNSVVKYIQSCDSCLRSKQS 760  Rhizoctonia solani
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap