Conserved Protein Domain Family
NCOA_u2

?
pfam16665: NCOA_u2 (this model, PSSM-Id:406952 is obsolete and has been replaced by 465223)
Unstructured region on nuclear receptor coactivator protein
NCOA_u2 is a region of natively unstructured but highly conserved sequence found on higher eukaryote nuclear receptor coactivator proteins. It lies between a PAS domain, pfam14598 and a steroid receptor coactivator domain, pfam08832. The function is not known.
Statistics
?
PSSM-Id: 406952
Aligned: 22 rows
Threshold Bit Score: 83.2422
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
XP_016852042  467 HAM-NLSSSPMNSPGVTPPQ---FMSPRHRvspglvHRPRVPSNPFSPT--------------------------MpTTH 516  green anole
XP_014341047  465 HPL-NLNSSPMGSPAVTPPH---FMSPRARgspglvGSPRISGNPFSPS--------------------------MpGTH 514  coelacanth
XP_014967316  467 pSL-NLNNSPMEGTGISLAQ---FMSPRRQvtsgltTRPRMPNNSFPPN--------------------------IsTLS 516  Rhesus monkey
XP_007260174  466 YSL-KMNSPSQGSPG--------MLSPRHRaspgiaGSPRMPPPQFSPA--------------------------N-ALH 509  Mexican tetra
XP_015209118  469 YAL-KMNSPSQSSPGMTPGQqnsMLSPRHRvspgmaGSPRVPPTQFSPA--------------------------G-SLH 520  spotted gar
XP_011475689  488 FGLsGMNSPS-GSPRIGGPQqgfLMSPRNR------GSPKMGANQFSPG----------------------------GMH 532  Japanese medaka
1_pfamImport    1 YGM-GMTSPTQASPAMNAPPhnvLSSPRVR------GSPKMGASPFSPL--------------------------S-GLN 46  
XP_005926233  480 FGLsGMNSPS-GSPRMGVPQqglLMSPRNR------GSPKMGSNQFSPG----------------------------GLH 524  Burton's mout...
CAG04067      542 FGLgGMNSPS-GSPRMSGPQqglLMSPRNR------GSPKMGANQFSPGgtlvnpttgwrrllagfrsssfclffA-GIH 613  spotted green...
PKU27478       82 YAL-KMNSPSQSSPGMNPGQpnsMLSPRHRvspgvaGSPRIPPSQFSPA--------------------------G-SLH 133  Limosa lappon...
XP_016852042  517 SPVGMmggcgVASAvGNRPYPGTPLNSMQGLREGPSPPVGYSTPSPVL--RQLSNQNspsrMSMPPMKTE--------PK 586  green anole
XP_014341047  515 SPVAVpn---sSISsASRPYSNNALNPVTGFGEGPSTPLGYSTPSPIQ--KQLSAQSspgpLAMQTAKPE--------PR 581  coelacanth
XP_014967316  517 SPVGMts--sACNNnTNRSYSNIPVTSLQGMNEGPNNSVGFSANSPVL--RQMSSQNspsrLNIQPAKAE--------SK 584  Rhesus monkey
XP_007260174  510 SPVPVcn--sSGNVgGAHGYTSSSLNALQALSECHNISLGPALGSPDR--KLASPANpa-gVNPHLLHKLg-------GS 577  Mexican tetra
XP_015209118  521 SPAGM-----NSSTgNSHSYSSSSLNALHALSEAHGVTLGQSLASPDR--KLGNAQSspspANPHPLAKLg-------SS 586  spotted gar
XP_011475689  533 SPMGSigsggAGGG-GTSTFSSSSLNALQAISEGVGSSLSSTLTSPPPahKPDSSPS----IHSSSSSSQpnqqgkpsQD 607  Japanese medaka
1_pfamImport   47 SPMSSshpgnAG---GGSTFSSSSLNALQAISEGVGNPMPSPLTSPPPq-RPDSSPS----INSTNVPTgpck--lptYA 116 
XP_005926233  525 SPMSGigsngGSGG-STTTFSSSSLNALQAISEGVGSSLPSTLTSPSPahKPDSSPS----IHSSSSSSQ---------- 589  Burton's mout...
CAG04067      614 SPMSGigsglGSGG-GGTTFSSSSLNALQAISEGVGSSLPSTLTSPSPvlKPDSSPS----IHSSSSLSQltqtakggLD 688  spotted green...
PKU27478      134 SPVGVc----SSTG-NSHNYTNSSLNALQALSEGHGVSLGSSLASPDL--KMGNLQNspvnMNPPQLSKMg-------SM 199  Limosa lappon...
XP_016852042  587 DSKEMG 592  green anole
XP_014341047  582 DSKEMS 587  coelacanth
XP_014967316  585 DNKEIA 590  Rhesus monkey
XP_007260174  578 ESyaeh 583  Mexican tetra
XP_015209118  587 DFKESF 592  spotted gar
XP_011475689  608 GCKSPT 613  Japanese medaka
1_pfamImport  117 DSKSPG 122 
XP_005926233  590 ----PS 591  Burton's mouthbrooder
CAG04067      689 GSKSPA 694  spotted green pufferfish
PKU27478      200 DSKDCF 205  Limosa lapponica baueri
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap