Conserved Protein Domain Family
Tmp39

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pfam10271: Tmp39 (this model, PSSM-Id:402061 is obsolete and has been replaced by 463038)
Putative transmembrane protein
This is a family of conserved proteins found from worms to humans. They are putative transmembrane proteins but the function is unknown.
Statistics
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PSSM-Id: 402061
Aligned: 15 rows
Threshold Bit Score: 463.417
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q5U2V9        42 AIGLPVPPTtALITPGPVRHCQIPDLP-VDGSLFFEFLFFIYLLIVLFIQYINIYKTVWWYPYNHpASCTSLNFHLIDYY 120 Norway rat
NP_955926     42 AVGLSAPPLtALITPEPVRHSRIPDLP-LDSNLLFETLLLLYLLVALLVQYINIYRTVWWSSYSQpTASTSLNFHLMDAH 120 zebrafish
XP_006639253  42 SVGLSAPPItALITPEPVRHSRIPELP-LDGSLLFEFLLFTYLLVALFVQYINIYKTVWWYPYSHpAASTSLNFHLIDYH 120 spotted gar
XP_003727503  47 ggGGSNTPLtTLITITPIRHPDIPNLP-AECSLLFETHTVIYLLTALFLQYINIYKTVWWLPLA--PSNTAMNFHLIDPF 123 purple sea urchin
EDO41973      64 SIGTVRQTIsSLLTIPQLYHIPIPRVP-IFNAMGFEILFFAYLVSALGLQYLNIYK---------------LNFHVVDVH 127 starlet sea ane...
EKC27988      30 drdtnMVPL-AQMAVLP-KHCHLPEIP-SDPNMSFEAMLYFFGVIAMGLQYINLYRTVWWLPHSH--ANYALNFYLIDVY 104 Pacific oyster
EFO84726      15 atvTVPPPRtSGVTLS--VHPIWPDIQfTQGELFFECTLFLYSVLALFLQYLNIYKTLWWLPKSY--WHYSLKFHLINPY 90  Caenorhabditis ...
XP_001959491  26 KPGQAQTPA----TAMP-KHIPFPDHA-TTSEWLSELIMCAFTMGSAIVQFINIYRTNWWLPQAH--TRHMVNIDLIDPH 97  Drosophila anan...
Q7ZW11        48 GTGMSSPPL-ATQTVVPLKHCKIPELS-MDKNVLFELHLFACHLIALFVHYVNIYKTVWWYPPSHpPSHTSLNFHLIDYN 125 zebrafish
2_pfamImport   1 GTGLSSPPL-ATQTVIPLRHCKIPELP-VQPSILFELQLFFCHLVALFVHYINIYKTVWWYPPSHpPSHTSLNFHLIDFN 78 
Q5U2V9       121 LAAFITVMLARRL---VWALISEATKAGAASMVHYT--ALILARL---VLLTLCGWVLCWTLVN--------LFRSHSVL 184 Norway rat
NP_955926    121 LAVFIAVMLSRRL---VWTLLSEVCVACPASPLCYV--LLLVVRV---CVLTLCGWVLCWTLLN--------LFRSHSVL 184 zebrafish
XP_006639253 121 LATFITVMLARRL---VWTIISEASQTGPTSVVRYT--VLIAARL---TLLTLCGWVLCWTLVS--------LFKNHSVL 184 spotted gar
XP_003727503 124 LLIFVTLVLIRRL---VWHFIIELTP--------IV--TIVTARY---CVLQVIKLIITLTFLNlglwclwqLMNNNSPL 187 purple sea urchin
EDO41973     128 LVTFILIFLSRRL---IWNILKQTLA--------SE--ILFTVKYflgLIFKAVIFLVVICTLTwll---wkLFQHNSIQ 191 starlet sea ane...
EKC27988     105 LVLFLCILMSRRI---VWCFVQEVYG---SRFSKSV--LFWVVQFlkgALLGSIALGLVYTAYM--------VVANHSAL 168 Pacific oyster
EFO84726      91 FLSCVGLLLGWRVtvcFWKTITEVIAAISANQSQFVqsSLMIVEY---AAIKTPVMTLIITSFLfsfnrvchDFPSRSVL 167 Caenorhabditis ...
XP_001959491  98 LRYLLFILNTRRL---IYCLLL-IKIRKFDENTQNW--IRLGVKY---GFGGLVQLGLGFCAVK--------LYQQHTYI 160 Drosophila anan...
Q7ZW11       126 MLVFTVIVLARRL---IAAIVKEASQSGKLSFPHSV--FLVTARF---AVLTLAGWSLCRSLIY--------LFKTYSVL 189 zebrafish
2_pfamImport  79 VLAVTTLVLGRRL---IGAIVKEASQSSKVSLPCSV--FLVITRF---AVLTGTGWSLCRSIIH--------LFRTYSFL 142
Q5U2V9       185 NLLFLGYPFGVYVPLYCFHQDSRAhlllTD--YVVQHQAvedaasnVGSLTR-SKDFLSLLLESLKEQFn----NSTPI- 256 Norway rat
NP_955926    185 KLLFLGYPFGVYVPLCCLHQDGSPa---ADcgFADADGA-------DGALLQ-PRDFLTLLRENLRQQL-----SGTHTh 248 zebrafish
XP_006639253 185 NLLFLGYPFGVYVPLCCFHQESRTqtlpADcgYLEQEQM-------DGPLLR-PKDFLTLLRENLREQFn----SPTSI- 251 spotted gar
XP_003727503 188 NLLFLAYPLISYFLLYGLTLDFNMtlfsQ-----------------LAPPAKgSKEELlw-------------nGITMLa 237 purple sea urchin
EDO41973     192 NCLFLLYPIVMYLCAFGFTLDPQGnkv----------------mfkISPHVEiSQIHLIPTRTMEKKAFqngdaRQELI- 254 starlet sea ane...
EKC27988     169 YCLFLSCPVITYVFLFG-----------PSikPLYHRCLvwptsvcDRPRHKkEEEEVILF------------------- 218 Pacific oyster
EFO84726     168 WFLF---PVFFYVFIF----------------RSEIIGWlrkfrelVGKWRRkESDFSTICERLTESPp-----AQIDLd 223 Caenorhabditis ...
XP_001959491 161 LLLFLSYPVIIYLFIFGFQLE---------------------------PFLR-TRFELp---------------GVYINd 197 Drosophila anan...
Q7ZW11       190 SLLFLCYPFGMYIPFFRLSCDFRRa---GSmsPLSGIGSkd---vgAAALGRgGRDYLSVLKETWKQHTsq-lySAQPM- 261 zebrafish
2_pfamImport 143 NLLFLCYPFGMYIPFLQLNYDFRKt---SLftQVANIGPreaggsgSSPPSR-GRDYLTVLKETWKQHTqq-lyGAEAM- 216
Q5U2V9       257 -PTHSCPLSPDLIRNEVECLKADFNHRIKDVLFNSLFSAYYVAFLPLCFV-KST-------QYYD-MRWSCEHLIMVWIN 326 Norway rat
NP_955926    249 tHTHTCPPSPELIRSEVQQLKTDFNRRIKEVLFNSLLSAYYVAFLPLCFV-KST-------QYYD-MRWSCEHLIMVWIN 319 zebrafish
XP_006639253 252 -PAHTCPLSPDLIRNEVECLKADFNRRIKEVLFNSLFSAYYVAFLPLCFV-KST-------QYYD-MQWSCEHLIMVWIN 321 spotted gar
XP_003727503 238 pAKHKCSHVPNEIRQEADLLKMDFNSRVKSVLFNSMVCAYYVGFVPICFL-QPA-------MYLD-LWWSCFLIAFVWIN 308 purple sea urchin
EDO41973     255 -GKPNCTLPPDAVRYEAECLRTDFNSRIKQVLFQSLLCAYFVGFLPMRFSeQHH-------VYYD-LWWACQQILFIWLS 325 starlet sea ane...
EKC27988     219 ---HNCVLTPDVIRSEVEYFKLDFNNRIKQVLFNSLLTAYYMTFVPLCFA-QNT-------LYYD-TWWVGQHVVVTWLS 286 Pacific oyster
EFO84726     224 sVLHMCSDNPAQIREEIQVLIDDLVLRVKKSIFAGVSTAFLSIMLPCIFVpYKTsqgipqkILIN-EFWECQLGIVVGLT 302 Caenorhabditis ...
XP_001959491 198 mPVHSCTTNAVHIRDEVETLRHDFNRRFKQLIFTSMLNAYYSGLVPCCLA--VS-------VQYN-VIRAAQHCLGVCLG 267 Drosophila anan...
Q7ZW11       262 -PTHACCLSPDLIRKEVEYLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFV-KST-------QYVD-KRWSCELFILVSVS 331 zebrafish
2_pfamImport 217 -PTHACCLSPDLIRNEVEFLKMDFNWRMKEVLVSSMLSAYYVAFVPVWFV-KVS-------ATVDiKCFPPSSLYQLHLA 287
Q5U2V9       327 AFVMLTTQLLPSKYCDLLHKSAAHL-------GKWQKL---EHGFYSNAPQHI---WSENTIWPQGVLVRH-SRCLYRAM 392 Norway rat
NP_955926    320 AFVMLMSHLLPPHYCDLLHRCAAHL-------GRWQRL---EPGSCSNTPQHT---WSDSTIWPQGVLVRH-SRCLYKAV 385 zebrafish
XP_006639253 322 AFVMLMSQLLPPKYCDLLHRSAAHL-------GKWQKL---EHGSYSNAPQHV---WSENTIWPQGVLVRH-NRCLYKAV 387 spotted gar
XP_003727503 309 SFVMFGSHFLPVAYCDALHRCSLHL-------GRWQKM---EHG-YSNTPQHL---WSDTTVWPQGVLVRY-NKGIYRAT 373 purple sea urchin
EDO41973     326 SLLVLMMYMLPLTYCDALHKCAVHL-------GGWERY---TCG-HRETP-HV---WSPLTVWPQGVLVRH-NKLLYKGL 389 starlet sea ane...
EKC27988     287 AFLMLIVHYLPPKYLDLLHRTALHL-------GRWQKV----EGRHAHVPYNA---WSELTVWPPGALVKH-VKGLFKAE 351 Pacific oyster
EFO84726     303 AFSLYVAYLSPLNYLDLLHRAAIHL-------GSWRQIegpRIGHTGSMISAPt-pWNEFCLYNDGETVQMpDGRCYRAK 374 Caenorhabditis ...
XP_001959491 268 AFSLCAVFLYPAKYSDTLHRATLHL-------GCWQRI---GTVPVQLIAAANaptWSKYSSYGHGTVVKH-NGGLYRSH 336 Drosophila anan...
Q7ZW11       332 TSVILMRHLLPPRYCDLLHKAAAHL-------GCWQKV---DPSLCSNVLQHI---WTEEYMWPQGVLVKH-SKNVYKAM 397 zebrafish
2_pfamImport 288 SFLLVQSSSLPQP----VDASPTHIprdgiqaGDW----------CDKTLLGSsprWTEECMWPQGVLVKH-SKNVYKAI 352
Q5U2V9       393 GPYNV----AVPSDGSHARFYFLFHRPLRVLNLLILIEGSVIIYQLYSLLRSE-KWNHTLSMALVLFCNYYVLFKLLRDR 467 Norway rat
NP_955926    386 GPYNV----ALPSDVSHARFYFLFHKPLRLLNVLIGIECSVVVYQLYSLLRSE-RWNHTLSLGLILVCNYYVLFKLLRDR 460 zebrafish
XP_006639253 388 GPCNV----AVPSDVSHARFYFLFHKPLRILNLLILIEGSVVLYQLYSLLRSE-KWNHTLSLALILFCNYYVLFKLLRDR 462 spotted gar
XP_003727503 374 GQQNV----AFPSDRSYARFYFMFHDPLRVLNLFVFLQLGVIATQLYLLIRHS-HWHYVISLSLLLFCNYYVLFKLLRSR 448 purple sea urchin
EDO41973     390 GIHNV----AIPGDPHHSRFFFMFESPLRLINWMSASLLALVLYQLVLIIRCH-FWYQLLSVVGMLSFNYVILYRILRDR 464 starlet sea ane...
EKC27988     352 GINVT----AEPGNGMHGRFFFLFHQPMRVVNWLLILTWLLVGYQFFCLIQST-EWNHIVCIALVLFCNYYTLFKLLRDR 426 Pacific oyster
EFO84726     375 ASHLIrtvaAHPESSRHNTFFRVLQRPHYLINAMCTFEFVLIFIQFWMLVLTN-DWQHIVTFVLLMFANYLLFAKLFKDK 453 Caenorhabditis ...
XP_001959491 337 GVVTV----ATPGNTSHARFYKLFHNPTTIYSTLAILQAAVLLVEIGSLSAESvEWHFVLSISFVAFTSMGAFFKLVRDY 412 Drosophila anan...
Q7ZW11       398 GHYNV----AVPSDVSHYRFYFFFNKPLRILNILIILEGAMIFYQLYSLMCSE-KWHQTISLALILFSNYYAFFKLLRDR 472 zebrafish
2_pfamImport 353 GHYNV----AVPSDVSHFRFHFFFSKPLRILNILLLLEGAVIFYQLYSLVSSE-KWHQTISLALILFSNYYAFFKLLRDR 427
Q5U2V9       468 IVLGRAYS 475 Norway rat
NP_955926    461 LVLGKAYS 468 zebrafish
XP_006639253 463 IVLGKAYS 470 spotted gar
XP_003727503 449 FILGKVYR 456 purple sea urchin
EDO41973     465 WALQGVLA 472 starlet sea anemone
EKC27988     427 IILAKAYK 434 Pacific oyster
EFO84726     454 IILGRIYE 461 Caenorhabditis remanei
XP_001959491 413 LITKDLYK 420 Drosophila ananassae
Q7ZW11       473 IVLGKAYS 480 zebrafish
2_pfamImport 428 LVLGKAYS 435
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