6URO


Conserved Protein Domain Family
Suf

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pfam05843: Suf (this model, PSSM-Id:399092 is obsolete and has been replaced by 428647)
Suppressor of forked protein (Suf)
This family consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster Suppressor of forked [Su(f)] protein shares homology with the yeast RNA14 protein and the 77-kDa subunit of human cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and an important role of the GU-rich sequence for this regulation to occur.
Statistics
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PSSM-Id: 399092
Aligned: 21 rows
Threshold Bit Score: 261.15
Created: 11-May-2020
Updated: 7-Aug-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
6URO_E       375 TLVYIQYMKFARRAEGIKSGRMIFKKAR-EDTRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY 453 
Q4PCV8       623 ALVWIKYMHFLRRTEGIRPARSVFSRAR-KSPHCTWQVFEASALMEYHCSKDAVVATKVFELALKTFGSDEAFVVRYLDF 701  Ustilago maydi...
EDO40717     391 TLAFIQYMRFSRRAEGVKESRSVFKRAR-EDARTNFHVFVASALMEYYCGKDKAVAFKIFELGLKKYTNEADFVLPYVDY 469  starlet sea an...
XP_020797035 375 TLVYIQYMKFARRAEGIKSGRTIFKKAR-EDPRTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYILAYIDY 453  great blue-spo...
Q0IFE2       375 TLAYIQYMKFARRAEGIISARAIFKKAR-EDVRSTYHVFVAAALMEYYCTKDKDIAFRIFELGLKRFGGSPEYVMCYIDY 453  yellow fever m...
P25991       408 TLVYVQYMKFARRAEGIKSARSIFKKAR-EDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMCYIDY 486  fruit fly
Q8GUP1       333 SLAHIQYLRFLRRAEGVEAARKYFLDAR-KSPSCTYHVYIAFATMAFCIDKEPKVAHNIFEEGLKLYMSEPVYILKYADF 411  thale cress
P25298       413 TFVFCVYMNTMKRISGLSAARTVFGKCRkLKRILTHDVYVENAYLEFQNQNDYKTAFKVLELGLKYFQNDGVYINKYLDF 492  Saccharomyces ...
Q6BJD8       445 TLVYTKLMMACKRSRGIKEARGVFKQARnNFEAIGYEFYVENALMEYH-SDNLKTASKIFELGMKHFKKQGEFLLAYLDF 523  Debaryomyces h...
Q5AM44       482 TLTYVKFMIASKRSEGIKEARNVFKQAR-KFTDIGYQIFIESALLEHY-SDKKSTALKIFDLGKKNFATNGKFLLNYLDY 559  Candida albica...
6URO_E       454 LSHLNEDNNTRVLFERVLTsgS--LPPEK---------------------------------SGEIWARFLAFESNIGDL 498 
Q4PCV8       702 LISMNDDSNARALFERVIG--T--FAPER---------------------------------ARPIWERWAKYEYNFGDS 744  Ustilago maydi...
EDO40717     470 LSHLNDDNNTRVLFEKVLS--T--MPKEK---------------------------------ASDVWTKFIEFETTSGDL 512  starlet sea an...
XP_020797035 454 LSHLNEDNNTRVLFERVLT--SgnLSPEK---------------------------------SGEIWARFLAFESNIGDL 498  great blue-spo...
Q0IFE2       454 LSHLNEDNNTRVLFERVLS--SggLTPQL---------------------------------SVEVWNRFLEFESNIGDL 498  yellow fever m...
P25991       487 LSHLNEDNNTRVLFERVLS--SggLSPHK---------------------------------SVEVWNRFLEFESNIGDL 531  fruit fly
Q8GUP1       412 LTRLNDDRNIRALFERALS--T--LPVED---------------------------------SAEVWKRFIQFEQTYGDL 454  thale cress
P25298       493 LIFLNKDSQIKTLFETSVE--K--VQDLTq--------------------------------LKEIYKKMISYESKFGNL 536  Saccharomyces ...
Q6BJD8       524 LIMINKGESIKVLFEQGLT--A--LLQDVnienensngditsganmrlqeskskenikkkncIKKLIKKFSRYQSVYGDL 599  Debaryomyces h...
Q5AM44       560 LIMINDVDTMRTVIQSSDA--N--FTKEIgnlqeelkltnldpi---trkklekqitnlkkfLKQLYKKYISFAATFLSL 632  Candida albica...
6URO_E       499 ASILKVEKRRFTAFKE---------EyegKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAAII----------- 558 
Q4PCV8       745 VAIQKLESRLAETYPD---------E---PATKRFIARSSYMDLDLVGPRDLGIRAAMAGASAADRAVEaakdggaeegp 812  Ustilago maydi...
EDO40717     513 SSILKVEKRRLQVYKEef------eQ---HETAVLVDRYRFLDLLPCSPMELKIMGYTGPSRHVTSISTa---------- 573  starlet sea an...
XP_020797035 499 ASILKVERRRFAAFKDey------eG---KETALLVDRYKFMDLYPCSTSELKALGYKDVSRAKLAALLpet-------- 561  great blue-spo...
Q0IFE2       499 SSIVKVERRRSAVLEKlke----feG---KETAQLVDRYKFLNLYPCSSAELKSIGYTETDGILNP-------------- 557  yellow fever m...
P25991       532 SSIVKVERRRSAVFENlke----yeG---KETAQLVDRYKFLDLYPCTSTELKSIGYAENVGIILNKVGgg--------- 595  fruit fly
Q8GUP1       455 ASILKVEQRMKEALSGkgeegssppE---SSLQDVVSRYSYMDLWPCTSNDLDHLARQELLVKNLNKKAgkt-------- 523  thale cress
P25298       537 NNVYSLEKRFFERFPQ---------E---NLIEVFTSRYQIQNSNLIKKLELTYMYNEEEDSYFSSGNGd---------- 594  Saccharomyces ...
Q6BJD8       600 DLIKSLDSRYEEYFPD---------D---DSIELFSDRYRGHSIDVIKHFDLGKEDTSHEEIDTT--------------- 652  Debaryomyces h...
Q5AM44       633 DVTHSFAKKCEQLFPK---------D---DPIDLFTDRYKLDNINIIKKDELGRDDILTSFDGIIDEEE----------- 689  Candida albica...
6URO_E       559 PDPVVAPSIVPVLKDEVDRKPe-yPKPDTQQMIPF--------------------------QPRHLAPPGLHPVPGGVFP 611 
Q4PCV8       813 RRKTMQEMKRLAAESAQDDTSgdwARPGASSSAGGaggppvk------------kfkrdsaSPAPAAFNNQAVGQQVAGP 880  Ustilago maydi...
EDO40717     574 -----qSSTDNPLEEVKEEKTvrfPLPDTSQMTp--------------------------fKPTAGAAKCLKIGGGFRAS 622  starlet sea an...
XP_020797035 562 ----vvAPSVPILKDEIDRKPe-yPKPDTNQMIp--------------------------fQPRHLAPPGLHPVPGGVFP 610  great blue-spo...
Q0IFE2       558 ------ISTKHSTPVEAPEQPhkiPRPDFAQMIp--------------------------yKPKPNAYPGEHPLDGGAFP 605  yellow fever m...
P25991       596 ----aqSQNTGEVETDSEATPp-lPRPDFSQMIp--------------------------fKPRPCAHPGAHPLAGGVFP 644  fruit fly
Q8GUP1       524 ------nlPHVPAAIGSVASSskvVYPDTSQMVVQdptkksefassanpvaasasntfpstVTATATHGSASTFDEIPKT 597  thale cress
P25298       595 -------gHHGSYNMSSSDrkr------------------------------------lmeETGNNGNFSNKKFKRDSE- 630  Saccharomyces ...
Q6BJD8       653 ------AQETKRRKIQNPTvdeft---------------------------------pevsNNNNQHTNNKDAVQNQQQP 693  Debaryomyces h...
Q5AM44       690 ------LQRLKRRKLSNGSGSsssysfne------------------------eesksaikNIEEQKTRVQQEQDQENQG 739  Candida albica...
6URO_E       612 --------VPPAAVVLMKLLPPPICFQGP---FVQVDELMEIFR-RCKIP 649 
Q4PCV8       881 rda--wneFPESVLVFMEMLPSAQLFDGP---MFKPEDIIDCIR-SANVP 924  Ustilago maydis 521
EDO40717     623 --------PPPP-------LEPPPLFNGP---FVVIEELMRLFA-ECTLP 653  starlet sea anemone
XP_020797035 611 --------VPPAAVVLMKLLPPPTCFTGP---FVQVDELMETFR-RCTLP 648  great blue-spotted mudskipper
Q0IFE2       606 --------QPPALAALCSMLPPPICFHGP---FVSVDKLQDLFS-RIVLP 643  yellow fever mosquito
P25991       645 --------QPPALAALCATLPPPNSFRGP---FVSVELLFDIFM-RLNLP 682  fruit fly
Q8GUP1       598 --------TPPALVAFLANLPIV---DGP---TPNVDVVLSICL-QSDFP 632  thale cress
P25298       631 --------LPTEVLDLLSVIPKRQYFNTN---LLDAQKLVNFLNdQVEIP 669  Saccharomyces cerevisiae S288C
Q6BJD8       694 qn-----fVGNTIYNLLRVLPNSSYFGPPsdhLFNNTKLVELFG---NLP 735  Debaryomyces hansenii CBS767
Q5AM44       740 inkpeesfVGPSIIALMSALPNASYFGLPsesVFNSEKLVTLFAnLSNIP 789  Candida albicans SC5314
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