3LHR,1Y7Q,2FI2


Conserved Protein Domain Family
SCAN
?
pfam02023: SCAN (this model, PSSM-Id:396558 is obsolete and has been replaced by 460417)
SCAN domain
The SCAN domain (named after SRE-ZBP, CTfin51, AW-1 and Number 18 cDNA) is found in several pfam00096 proteins. The domain has been shown to be able to mediate homo- and hetero-oligomerization.
Links
?
Statistics
?
PSSM-Id: 396558
Aligned: 217 rows
Threshold Bit Score: 70.5791
Created: 20-May-2020
Updated: 7-Aug-2020
Structure
?
Program:
Drawing:
Aligned Rows:
Download Cn3D
PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection: 
3LHR_A           5 PEIFRQRFRQFGYQDSPGPREAVSQLRELCRLWLRPE--THTKEQILELVVLEQFVAILPKELQTWVRDHHPENGEEAVT 82  
XP_011662566   146 EEGCRLKFRHAKIQSGETYIQFASRIEKYFDRWLELSpyDSSIDGMKSLTLQEQVLDTGNRELLMFIKERQPSSLQNLLI 225  purple sea u...
5_pfamImport     1 PEAYRQKFRGFTKSSEESFIEFAREKEQLFDRWCVSTgvERNFDKLKQLVLMEEFKSCVSKQIRLFLEEKQVVDLETAAK 80  
XP_002408862   107 TEAFRQRFRGDTKKTEQSFTEFAYSLRSNLVEWLKSAevYGDHDRIVECIGLEQLCKCMPETVRFWVQDKVPETTQKAAE 186  black-legged...
OCA30465       250 PEMHRKKFRGIHRGANDSYSDVVGRLRTTFHQWIQGRs-VSTFAELGDLMILDQFLCICPVEVQQFVLDREPKTVVQAAQ 328  tropical cla...
OCA14598       234 PEVYRRKFRALNREPKDSYSDVVGNLRTTFRQWIKGLs-INTLAELEDLMVKDQFLHICPAEVRQFVVDREPKTAAKAAE 312  tropical cla...
OCA19800       257 PEVYRKKFRTVQRGPTDSYSDVVSSLRTTFKAWLRGLs-VTTFDCLEDLMIKDQFLHTCPVEVRQFIMDREPKTADQAAE 335  tropical cla...
45_pfamImport    1 PEAYRLRFRSWRKGEKQTYTEVARELYSHFNRWCSAVg-VTTFEELSNLIVLEQFRNILPERVATHIFEHKMKTAAEAAV 79  
XP_011667770   152 EEGYRTKFRYAKLHQGETYVQYAHRIEKYLDRWIDLSsyDDNVEGLKSLLIQEQIFNTSSKECLMFVKERHPGKLTEVLT 231  purple sea u...
OCT98740        70 EETYRQRFRQLKYSAADSPREVFTRLTDLYIKRMKPE--LKTHQQITETILMEQFVKILPEDVSSWVQKHRPNTAEKAIS 147  African claw...

3LHR_A          83 VLEDLESEL 91  
XP_011662566   226 LADQYRDAH 234  purple sea urchin
5_pfamImport    81 LAEEYVLTH 89  
XP_002408862   187 LAEEYLSRR 195  black-legged tick
OCA30465       329 LADAYTANr 337  tropical clawed frog
OCA14598       313 IADTYAASr 321  tropical clawed frog
OCA19800       336 IADTYAANR 344  tropical clawed frog
45_pfamImport   80 VADDFALTH 88  
XP_011667770   232 LADQYHDAH 240  purple sea urchin
OCT98740       148 LSVDYLLAK 156  African clawed frog
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap