Conserved Protein Domain Family
Bbox1_TRIM9_C-I

?
cd19843: Bbox1_TRIM9_C-I 
B-box-type 1 zinc finger found in tripartite motif-containing protein 9 (TRIM9) and similar proteins
TRIM9 (the human ortholog of rat Spring), also termed RING finger protein 91 (RNF91), is a brain-specific E3 ubiquitin-protein ligase collaborating with an E2 ubiquitin conjugating enzyme UBCH5b. TRIM9 plays an important role in the regulation of neuronal functions and participates in neurodegenerative disorders through its ligase activity. It interacts with the WD repeat region of beta-transducer repeat-containing protein (beta-TCP) through its N-terminal degron motif depending on the phosphorylation status, and thus negatively regulate nuclear factor-kappaB (NF-kappaB) activation in the NF-kappaB pro-inflammatory signaling pathway. Moreover, TRIM9 acts as a critical catalytic link between Netrin-1 and exocytosis soluble NSF attachment receptor protein (SNARE) machinery in murine cortical neurons. It promotes SNARE-mediated vesicle fusion and axon branching in a Netrin-dependent manner. TRIM9 belongs to the C-I subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, Bbox1 and Bbox2, and a coiled coil region, as well as a COS (carboxyl-terminal subgroup one signature) box, the fibronectin type III domain and the SPRY/B30.2 domain positioned C-terminal to the RBCC domain. The type 1 B-box (Bbox1) zinc finger is characterized by a C6H2 zinc-binding consensus motif.
Statistics
?
PSSM-Id: 380901
Aligned: 6 rows
Threshold Bit Score: 113.934
Created: 10-Sep-2018
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C C C H HClick to see conserved feature residue pattern help
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens Midline-1 (2JUN) binds two Zn2+ ions through its B-box motif.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #          #  #    #  #    #        #     
Q9C026       166 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 212 human
XP_005996037 166 LKCQLCEKSPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 212 coelacanth
XP_007894099 149 TKCQLCERSPVEATVMCEQCDVFYCEPCQQRCHPARGPLAKHRLIPP 195 elephant shark
XP_002936620 169 LRCQLCEKSPKEATVMCEQCDVFYCEPCRLRCHPPRGPLAKHRLLPP 215 western clawed frog
KQK76573     162 LRCQLCEKAPKEAAVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 208 blue-fronted amazon
NP_991126    172 LKCQLCEKSPREATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPP 218 zebrafish

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap