2DID


Conserved Protein Domain Family
Bbox2_TRIM39-like

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cd19780: Bbox2_TRIM39-like 
B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM39, TRIM58 and similar proteins
The family includes TRIM39 and TRIM58, both of which belong to the C-IV subclass of TRIM (tripartite motif) family of proteins that are defined by their N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, Bbox2, and a coiled coil region, as well as a SPRY/B30.2 domain positioned C-terminal to the RBCC domain. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif. TRIM39, also termed RING finger protein 23 (RNF23), or testis-abundant finger protein, is an E3 ubiquitin-protein ligase that plays a role in controlling DNA damage-induced apoptosis through inhibition of the anaphase promoting complex (APC/C), a multiprotein ubiquitin ligase that controls multiple cell cycle regulators, including cyclins, geminin, and others. TRIM39 also functions as a regulator of several key processes in the proliferative cycle. It directly regulates p53 stability and modulates cell cycle progression and DNA damage responses via stabilization of p21. TRIM39 also negatively regulates the nuclear factor kappaB (NFkappaB)-mediated signaling pathway through stabilization of Cactin, an inhibitor of NFkappaB- and Toll-like receptor (TLR)-mediated transcription, which is induced by inflammatory stimulants such as tumor necrosis factor alpha (TNFalpha). TRIM39 is a MOAP-1-binding protein that can promote apoptosis signaling through stabilization of MOAP-1 via the inhibition of its poly-ubiquitination process. TRIM58, also known as protein BIA2, is an erythroid E3 ubiquitin-protein ligase induced during late erythropoiesis. It binds and ubiquitinates the intermediate chain of the microtubule motor dynein (DYNC1LI1/DYNC1LI2), stimulating the degradation of the dynein holoprotein complex. It may participate in the erythroblast enucleation process through regulation of nuclear polarization.
Statistics
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PSSM-Id: 380838
Aligned: 8 rows
Threshold Bit Score: 65.9423
Created: 4-Sep-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Zn binding site
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C H C D C C H HClick to see conserved feature residue pattern help
Evidence:
  • Structure:2DID; Homo sapiens TRIM39 binds two Zn2+ ions through its B-box motif.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1            #  #       #  #    #  #     #  #        
2DID_A         7 GESLCPQHHEALSLFCYEDQEAVCLICaiSHTHRAHTVVPLSGP 50  human
Q9HCM9       103 DESLCPQHHEALSLFCYEDQEAVCLICaiSHTHRAHTVVPLDDA 146 human
EMP27861      90 DESLCGKHNEVLNLFCKEDQEAVCLVCeiSHDHRSHTVVPLDDA 133 Green sea turtle
AIC36826     163 TTPLCMRHREELKLYCEEDQELVCLVCgiSQDHRAHTLVCVQDA 206 zebrafish
NP_001289175 163 TAPLCMRHREELKLYCEEDQELVCLVCgiSQDHRAHTLVCVQDA 206 zebrafish
XP_001514212  91 EANVCAKHREKLDHFCRDDHAAICVVCklSRDHRAHTIWDVAKA 134 platypus
XP_009554378  90 EENSCQRHGQALARFCRDDQALVCLLCeiSSNHRAHTLLPLDEA 133 common cuckoo
Q8NG06        92 GARRCARHGEDLSRFCEEDEAALCWVCdaGPEHRTHRTAPLQEA 135 human

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