Conserved Protein Domain Family
Bbox2_TRIM23_C-IX_rpt2

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cd19774: Bbox2_TRIM23_C-IX_rpt2 
second B-box-type 2 zinc finger found in tripartite motif-containing protein 23 (TRIM23) and similar proteins
TRIM23, also known as ADP-ribosylation factor domain-containing protein 1, GTP-binding protein ARD-1, or RING finger protein 46 (RNF46), is an E3 ubiquitin-protein ligase belonging to the C-IX subclass of TRIM (tripartite motif) family of proteins that are defined by an N-terminal RBCC (RING, Bbox, and coiled coil) domains, including three consecutive zinc-binding domains, a RING finger, two Bbox2, and a coiled coil region, as well as C-terminal ADP ribosylation factor (ARF) domains. The type 2 B-box (Bbox2) zinc finger is characterized by a CHC3H2 zinc-binding consensus motif. TRIM23 is involved in nuclear factor (NF)-kappaB activation. It mediates atypical lysine 27 (K27)-linked polyubiquitin conjugation to NF-kappaB essential modulator NEMO, also known as IKKgamma, which plays an important role in the NF-kappaB pathway, and this conjugation is essential for TLR3- and RIG-I/MDA5-mediated antiviral innate and inflammatory responses. It also regulates adipocyte differentiation via stabilization of the adipogenic activator peroxisome proliferator-activated receptor gamma (PPARgamma) through atypical ubiquitin conjugation to PPARgamma. Moreover, TRIM23 interacts with and polyubiquitinates yellow fever virus (YFV) NS5 to promote its binding to STAT2 and trigger type I interferon (IFN-I) signaling inhibition.
Statistics
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PSSM-Id: 380832
Aligned: 35 rows
Threshold Bit Score: 47.0238
Created: 10-Sep-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C H C [DHE] C C H HClick to see conserved feature residue pattern help
Evidence:
  • Comment:Based on the structure evidence that Homo sapiens Midline-1 (2JUN) binds two Zn2+ ions through its B-box motif.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #  #        #  #         #  #     #   #         
P36406        174 EKTMCSQHQVhaIEFVCleEGCqt-spLMCCVCkeYGKHQg-HKHSVLEPEA 223  human
EGT51764      278 VLPMCTYHPRqpAALICknNECtmykeKYCWQCa-HERHK--HENPTALDQL 326  Caenorhabditis brenneri
EGT50315      131 EIPACPIHPEknASYVClrPTCsaaekIYCTLCqkARTHQg-HKSKKIEEHI 181  Caenorhabditis brenneri
EGT30424      258 VPPKCPLHPEkdAIFVClqTQCptghqLFCIACqkAKKHHlgHSFEDLQKCE 309  Caenorhabditis brenneri
XP_001022676    3 NEIYCSIHKNklIDAVCleKECse-nsLICYNC--RDTHQd-HIQSCIHLQD 50   Tetrahymena thermophila SB210
OZG16857      257 VPPNCQLHPDhkVRYVCtdIKCqlmskLFCEECk-FAEHRl-HAFEEVEQLI 306  Caenorhabditis latens
XP_003097288  263 VLPNCEIHPDnlVYYLCksETCqtetkLFCDECk-LNEHEs-HEHDNLAERV 312  Caenorhabditis remanei
EGT51754      245 QFGKCNKHPEnnAEYICkeRSCsnlikTMCITCaiQDDHRg-HAVEQITDHL 295  Caenorhabditis brenneri
XP_013756574    9 NAPICPQHNMp-WVGVCgeAECse-rrMGCAACiaRGTHKg-HAVEKLTNAL 57   Thecamonas trahens ATCC 50062
POM46931       90 EIPKCPIHEEkeIRYFCtdDECalstkEFCDECl-LTEHKs-HWYESIETRI 139  Caenorhabditis remanei

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