Conserved Protein Domain Family
DSRM_Kanadaptin

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cd19856: DSRM_Kanadaptin 
double-stranded RNA binding motif of Kanadaptin and similar proteins
Kanadaptin (also known as human lung cancer oncogene 3 protein (HLC-3), kidney anion exchanger adapter protein, or solute carrier family 4 anion exchanger member 1 adapter protein (SLC4A1AP)) is a nuclear protein widely expressed in mammalian tissues. It was originally isolated as a kidney Cl-/HCO3- anion exchanger 1 (kAE1)-binding protein. It is a highly mobile nucleocytoplasmic shuttling and multilocalizing protein. Its role in mammalian cells remains unclear. The double-stranded RNA binding motif (DSRM) is not sequence specific, but highly specific for dsRNAs of various origin and structure.
Statistics
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PSSM-Id: 380685
Aligned: 29 rows
Threshold Bit Score: 103.849
Created: 24-Oct-2018
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative RNA
Feature 1:putative RNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on structure evidence that Homo sapiens RNA helicase A (3VYX) binds dsRNA.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1              #  ##  ##  ##                                              #   #           
Q9BWU0        363 EAFYIKDPKKALQGFFDREgeeLEYEFDEQGhs---tWLCRVRLPVDdstGKQLVAEAIHsgKKKEAMIQCSLEACRILD 439  human
XP_001746455  289 VPFFVKDPKKALKVFFDRYgevPKYTVESQKegrqrlHMATLELPLKtisGNPITITASSdtKGKEAVVQCALKACRLLH 368  Monosiga brev...
OXU21194      294 EELFLENPKKALKDWFKWEghdLEYQTEDRGfg---qYSCWIVLTLDa-vGNTETVEAHVvgDKTRAINECAVKACRVLN 369  Trichomalopsi...
XP_004349908  436 QRYYFKDPKKALRAFFDREglhMNFDVEERGpghdrnYTARIKVPSYtaaSGWIQIEETAg-RKREAERAAALEACKQLD 514  Capsaspora ow...
CBY23820      385 NAFYHKDPLKAINHFFTSDlmePPWDFQQTPkg---kWICKLELPIGd-gASGITVEAEGe-GKLGAKTHCALEACMMLD 459  Oikopleura di...
EDV22213      282 DSYFVKDPKKALRHFFETAgvtMEYEVCESGtprnrtYQARIKLPVEtseGNCIYGEGTAe-KKKDAVVACALDGCRILE 360  Trichoplax ad...
EGF79068      272 NAFYYSDPRKALRVWFDSRgadLEYQHEEEGhgvtrgYVARIELPVEt-gFGKLIGVGHGs-KKRSAEHDAALEACFRLD 349  Batrachochytr...
EGD80570      310 KAFYRKDPQRALKHYLTQVgedLEFEFDQMQmgrtreYVATIELPIYdvnGRGMKISGQGe-RKKEAMESCCLNACRALD 388  Salpingoeca s...
XP_002166421  329 KDIEIKDPKKTLKGFFEREgleLEYEMTEKGsgssllHIAQIRLPIDvgdADFVIAEGSSs-NKKDAILNCANDACKIIQ 407  Hydra vulgaris
KNC82971      793 ERRWEKDPKKTLTNFFVNEs--LDYTPDITMlpknkgFLVKIELPIEsasGDLVVVEGQCg-RKRDAERLACYNACQMLS 869  Sphaeroforma ...
Feature 1               
Q9BWU0        440 TLGLLR 445  human
XP_001746455  369 SRGLLL 374  Monosiga brevicollis MX1
OXU21194      370 RYGLLR 375  Trichomalopsis sarcophagae
XP_004349908  515 QLDLLQ 520  Capsaspora owczarzaki ATCC 30864
CBY23820      460 RHGMFD 465  Oikopleura dioica
EDV22213      361 AYGMLR 366  Trichoplax adhaerens
EGF79068      350 KYGLLR 355  Batrachochytrium dendrobatidis JAM81
EGD80570      389 AKNLLR 394  Salpingoeca sp. ATCC50818
XP_002166421  408 AYDMLQ 413  Hydra vulgaris
KNC82971      870 AHGLFS 875  Sphaeroforma arctica JP610

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