3OM0


Conserved Protein Domain Family
PBP1_iGluR_Kainate_KA1_2

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cd06394: PBP1_iGluR_Kainate_KA1_2 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated by kainate and glutamate when expressed in heterologous systems. Kainate receptors are involved in excitatory neurotransmission by activating postsynaptic receptors and in inhibitory neurotransmission by modulating release of the inhibitory neurotransmitter GABA through a presynaptic mechanism. Kainate receptors are closely related to AMPA receptors. In contrast of AMPA receptors, kainate receptors play only a minor role in signaling at synapses and their function is not well defined.
Statistics
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PSSM-Id: 380616
Aligned: 5 rows
Threshold Bit Score: 718.23
Created: 12-Feb-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:
  • Comment:based on sequence and structure similarity to the N-terminal domain of GluR6-subtype glutamate receptor

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                        ###   #                      
3OM0_A      4 SLRMAAILDDqtvCGRGERLALALAREQINGiievpakARVEVDIFELqRDSQYETTDTMCQILPKGVVSVLGPSSSPAS 83   Norway rat
AAI55084   14 SVRMAAILDDssvCGRGERLALALARENINSvmenparARAEVDIFELqKDSQYETTDTMCQILPKGVVSVIGPASSPAS 93   zebrafish
NP_055434  24 SLRIAAILDDpmeCSRGERLSITLAKNRINRaperlgkAKVEVDIFELlRDSEYETAETMCQILPKGVVAVLGPSSSPAS 103  human
OCT70804   27 SLRVAAILDDqtvCGRGERLALALAREHINShtqgsasGRVEVEIFELqRDSQYETTDTMCQILPKGVVSVLGPSTSPAS 106  African clawed frog
3287849    23 SLRMAAILDDqtvCGRGERLALALAREQINGiievpakARVEVDIFELqRDSQYETTDTMCQILPKGVVSVLGPSSSPAS 102  human
Feature 1              #                                                    #  #   #  #  ##   
3OM0_A     84 ASTVSHICGEKEIPHIKVGPEEtprlqylrfaSVSLYPSNEDVSLAVSRILKsfnYPSASLICAKAECLLRLEELVRGFL 163  Norway rat
AAI55084   94 GSIVSHICGEKEIPHVKIGPEEtprlpylrfaSVTLYPSNEDLSLAIGSILRsfsYPSASLVCAKAECLLRLEELIRRFL 173  zebrafish
NP_055434 104 SSIISNICGEKEVPHFKVAPEEfvkfqfqrftTLNLHPSNTDISVAVAGILNffnCTTACLICAKAECLLNLEKLLRQFL 183  human
OCT70804  107 ASTVSHICGEKEIPHIKVGPEEapklqylrfaSVSLYPSNEDISLAVSHILKsfhNPSTSLICAKAECLLRLEELVRQFL 186  African clawed frog
3287849   103 ASTVSHICGEKEIPHIKVGPEEtprlqylrfaSVSLYPSNEDVSLAVSRILKsfnYPSASLICAKAECLLRLEELVRGFL 182  human
Feature 1           ####                                                                      
3OM0_A    164 ISkETLSVRMLDDSrDPTPLLKEIRDDkvsTIIIDANASiSHLVLRKASELGMtsAFYKYILTTMDFpilhlDGIVEDSS 243  Norway rat
AAI55084  174 ISrETLSIRMLDDNlDPTPLLKEIRDDkiaTIIIDANASiSYLILKKASELGMtsAFYKYILTTMDFpllwlDDIVDEQS 253  zebrafish
NP_055434 184 ISkDTLSVRMLDDTrDPTPLLKEIRDDktaTIIIHANASmSHTILLKAAELGMvsAYYTYIFTNLEFslqrmDSLVDDRV 263  human
OCT70804  187 ISkDTLSVRMLDESnDPTPLLKEIRDDkvsTIIIDANATvSHFILKKASELGMtsAHYKYILTTMDFpllslEGIVSDQS 266  African clawed frog
3287849   183 ISkETLSVRMLDDSrDPTPLLKEIRDDkvsTIIIDANASiSHLILRKASELGMtsAFYKYILTTMDFpilhlDGIVEDSS 262  human
Feature 1                                                                                     
3OM0_A    244 NILGFSMFNtSHPFYPEFVRSLNMSWRENCeastypGPALSAALMFDAVHVVVSAVRElnrsqeigvkplactsaniwph 323  Norway rat
AAI55084  254 NIVGFSMFNtTHPFYLEFIRSLNLSWREGCdinpypGPALSSALLFDAVHVVVSAVQElnrsqeigvkplsctspqiwqh 333  zebrafish
NP_055434 264 NILGFSIFNqSHAFFQEFAQSLNQSWQENCdhvpftGPALSSALLFDAVYAVVTAVQElnrsqeigvkplscgsaqiwqh 343  human
OCT70804  267 NILGFSMYNsSHPFYLEFLRSLNMSWRENCdrttylGPALSSALMFDAVHVVVSAVRElnrsqeigvkqlscstsqiwqh 346  African clawed frog
3287849   263 NILGFSMFNtSHPFYPEFVRSLNMSWRENCeastylGPALSAALMFDAVHVVVSAVRElnrsqeigvkplactsaniwph 342  human
Feature 1                                                                
3OM0_A    324 gTSLMNYLRmveydGLTGRVEFNSKGQRTNYTLRILEKsrqGHREIGVWYSNRTLAMNA 382  Norway rat
AAI55084  334 gTSLMNYLRmveydGLTGRVEFNSKGQRTNYTLHILEKhrgGHKEIGIWYSNNTLLMNS 392  zebrafish
NP_055434 344 gTSLMNYLRmveleGLTGHIEFNSKGQRSNYALKILQFtrnGFRQIGQWHVAEGLSMDS 402  human
OCT70804  347 gTSLMNYLRmveydGLTGRVEFNSKGQRTNYTLRILEKagdGHREIGVWYSNRTLAMNA 405  African clawed frog
3287849   343 gTSLMNYLRmveydGLTGRVEFNSKGQRTNYTLRILEKsrqGHREIGVWYSNRTLAMNA 401  human

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