Conserved Protein Domain Family
Nucleic_acid_bd

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pfam13820: Nucleic_acid_bd (this model, PSSM-Id:372737 is obsolete and has been replaced by 463988)
Putative nucleic acid-binding region
This is a family of putative nucleic acid-binding proteins. Several members are annotated as being nuclear receptor coactivator 6 proteins but this could not be confirmed.
Statistics
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PSSM-Id: 372737
Aligned: 11 rows
Threshold Bit Score: 132.166
Created: 21-May-2020
Updated: 7-Aug-2020
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_002603576  130 VMLTVHGHTR--MVEETKNRYRINLA--------RIGRTKK-SSIKYKGYKKHGSILVEFVVPQETLDLLRIMARHSDPR 198  Florida lancelet
XP_005986810   49 IFIAFKGNMEdaDLQQKLDKIIENVP--------CLLNMES-RKLKMQKVEPWNSVRVTFNIPREAADRLRLLAQNNNQQ 119  coelacanth
EFN81453       12 TVVTCEGDLGdpEFPEKLDTIVDSLK--------ALLSKEKgEDLKVDKVEPWNSVRVTFSIPREAALRLRELAAQGSPT 83   Jerdon's jump...
XP_002409522   12 TVLTCEGDLRdpAFPGRLQSLVLRLR--------ELISDEE-KPFWVKKVEPWNSVRVTFTLPREAALRLRQLAERGDRA 82   black-legged ...
XP_001527932  292 VFLAYIAGLQ--EEKYSLDSIREWVKklyapiinELIGTEK----------PLQKVAMA-----ELESLFRLATNLNNLS 354  Lodderomyces ...
XP_002605311    4 TYLVINGQRH--MIQETIDHHRRNIA--------SLCRIKR-SQVKFRGYKKGKSILVHFSIPRENTGVLRLMANHSDPR 72   Florida lancelet
EEN43919      130 TYVVVNGQVR--MIQETLDRLRNHIA--------RLSGTRR-SQVKFRGYKKHKSILVHFSIPRENTAVLRHMADHSDPR 198  Florida lancelet
EEN61843      235 IYVVVQGQVR--MVQEYLDRLRNSLA--------SLCRTRK-SQLMYRRYRRDRSVLVHFSIPRENTAVLRLMADYSDPR 303  Florida lancelet
XP_008108217   48 IFVAFKGNIDddDFKQKLNIILDNVP--------DLLNMES-DKLRLRKVEPWNSVRVTFNIPREAAERLRMLAQNNNQQ 118  green anole
ELW69582      142 IFVAFKGNIDdkDFKWKLDAILKSVP--------SLLHMES-SKLKVQKVEPWNSVRVTFNIPREAAERLRILAQSNNQQ 212  Chinese tree ...
XP_010562871   58 IFVAFKGNIGdrDFEQKLDTILENVP--------GLLHMES-NKLKLQKIEPWNSVRVTFNIPREAAERLRILAQNNNQQ 128  bald eagle
XP_002603576  199 LVFMGVTSLQIGREDPVKVPErtmlydiqndsamsNRLPQDDIQV-GCRVSPPSKATTRHWSSLSALN-----------L 266  Florida lancelet
XP_005986810  120 LRDLGILSVQIEGEGAINLAL--------------VQNRGQEVRInGPMGAANQIRMDPGLPMQGGPG-----------L 174  coelacanth
EFN81453       84 LTQLGILSVQVEGDQVISLRIas-----------rFGGDAQEIVLhSGTAQDGGAKSQGDATNNTATA------------ 140  Jerdon's jump...
XP_002409522   83 LRDLGILSVQLEGDQIISLTLag-----------rYGEPPKEIIL-----QKAAGEAEPGSPSSSPAG------------ 134  black-legged ...
XP_001527932  355 YKELDLRVTQIQSDPFV------------------VQISLDNVIL-GLGTSLNNFDEAQDKAAMGIIGdkakvaqiftmI 415  Lodderomyces ...
XP_002605311   73 LVYMGVKSLQIDTEAPIEVTRetml------ydfkRQVPADDIEV-GCSTQIKQQRTPKNWTRLSALN-----------L 134  Florida lancelet
EEN43919      199 LVYMGVKLLQIDAEVPIKVQQgapv------ydvkRQLPVDDIEV-GCSTRTKHQRAPQSWTRLSALN-----------L 260  Florida lancelet
EEN61843      304 LVYMGIKSLQIDAEPPITITQeaml------fdvkRQYPADDIDV-GCSTRMTLQRAPRNWTRLSALN-----------L 365  Florida lancelet
XP_008108217  119 LRDLGILSVQIEGEGAINLSL--------------AQNRGQDVRInGPVGQGNSVRMETGFSMPGNQG-----------L 173  green anole
ELW69582      213 LRDLGILSVQIEGEGAINLAL--------------AQNRSQDVRMnGPMGAGNSVRMEAGFPMAGGPG-----------L 267  Chinese tree ...
XP_010562871  129 LRDLGILSVQIEGEGAINLAL--------------AQNRSQDVRInGPLGASNSVRMETGFPMQGGQG-----------L 183  bald eagle
XP_002603576  267 FSDALPLHLKLAESLEY 283  Florida lancelet
XP_005986810  175 IRVNNPVAPGMSQAGNV 191  coelacanth
EFN81453      141 --DTNPSTALPGPSNAT 155  Jerdon's jumping ant
XP_002409522  135 PSSPVPGTGRPGPSGTA 151  black-legged tick
XP_001527932  416 IRNYVQNSERLVEHGST 432  Lodderomyces elongisporus NRRL YB-4239
XP_002605311  135 FSDALPLHLQVAESLEY 151  Florida lancelet
EEN43919      261 FSDALPLHLQAAASLEY 277  Florida lancelet
EEN61843      366 FSDALPLHLQVAESLEY 382  Florida lancelet
XP_008108217  174 IRINNPAAVMMQQSGNV 190  green anole
ELW69582      268 IRMSTPATVMIPQGGNV 284  Chinese tree shrew
XP_010562871  184 IRMSNAAAVMMSQSGNV 200  bald eagle
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