5YDR


Conserved Protein Domain Family
DNMT1-RFD

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pfam12047: DNMT1-RFD (this model, PSSM-Id:371865 is obsolete and has been replaced by 463444)
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Cytosine specific DNA methyltransferase replication foci domain
This domain is part of a cytosine specific DNA methyltransferase enzyme. It functions non-catalytically to target the protein towards replication foci. This allows the DNMT1 protein to methylate the correct residues. This domain targets DMAP1 and HDAC2 to the replication foci during the S phase of mitosis. They are thought to have some importance in conversion of critical histone lysine moieties.
Statistics
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PSSM-Id: 371865
Aligned: 18 rows
Threshold Bit Score: 104.35
Created: 13-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5YDR_B            53 LPQHKLTCFSVYCKHGHLCPIDtgliEKNIEL----FFSGSA-KPIY---------DDD----PSLEG-GVNGKN----L 109  human
Q9M0S8           368 LPCRTLHNWALYNSDSRMISLEvlpmRPCAEIdvtvFGSGVVaEDDGsgf---cldDSE----SSTSTqSNVHDGmnifL 440  thale cress
jgi:OSTLU_29004   54 LPMRVLDEYEFRDKFAEGKAVSvhgsRPNRVL----VLGRARkLEGGehg---lpsEVL----AAPLT-PQDKPPhalkL 121  Ostreococc...
jgi:OSTLU_16926  218 GIIRLLDDFELVQCETTSASCDtrarRRCIKFhedlFENPDVaATIRisg---rlrEVRsdalAPLGDdDEEDGGrqieV 294  Ostreococc...
O74560            10 RKTDLIEQVCVTNKAGELVDLEd--vLEYGPY----SLTGILsSEKD---------EQE----PLFDE--SIVLGysikI 68   Schizosacc...
Q6Z978            10 PQLKAVENYYFVDDNDVPVSFDvlpfQFDAAE----GVASFK-KDVYl--------------------rGFTDGGlqkvY 64   Japanese rice
Q7Y1I7           108 QPCRKIIDFILHDGDGNLQPFEmsevD---DI----FITALI-MPLD---------DDL----EKDRGkGICCSG----F 162  Japanese rice
P34881            81 RPTRRLNDFVLFDSDGVPQPLEmleiH---DI----FVSGAI-LPSD---------VCT----DKEKEkGVRCTS----F 135  thale cress
XP_009117317      87 RQTRRLTDFILHDEYGVPQPVAmv---eiGDI----FVTGVI-LPSG---------ECD----DKEKGkGVKCDG----F 141  field mustard
XP_006359979     412 LPRSMLHNWALYNSDSRLISLEllpmKACADIdvtiFGSGVMtADDGsgynfdtdaNHS----SSGGSrSAEIDGmpiyL 487  potato
5YDR_B           110 GPINEWWITGFD--GGekALIGFSTSFAEYILMDPSPEYAPIFGLMQE-KIYISKIVVEFLQSNs----D--STYEDLIN 180  human
Q9M0S8           441 SQIKEWMIEFGA--EM--IFVTLRTDMAWYRLGKPSKQYAPWFETVMK-TVRVAISIFNMLMREsr-vaK--LSYANVIK 512  thale cress
jgi:OSTLU_29004  122 MEVHDWTIKY----GGdePELWLVTPRAWYKLLNPAPRFEKYVTVTTR-RANFTNAIVRALVKNw----E--LSLEEGLD 190  Ostreococc...
jgi:OSTLU_16926  295 GNIVAYQYSFVAtvPEi-RGFYLVTSTATYKLLKPKATYSMLYNRSFQmRYDLARRTARALPRSp----R--SSLESIIP 367  Ostreococc...
O74560            69 SPV--WTYNLKDvpEKetMSIWIVTPQRRYGILSPSSEYKAIYEQISE-KNRLFYLIKTKFKDDmisgtL--EDYDNYIE 143  Schizosacc...
Q6Z978            65 KQVVAWKLVLDG--DSp-EIAVLSTEGSWIALLKPRPS----YEETIR-SVLITVEMLHFVRRRpt-dsE--KDMWDHLY 133  Japanese rice
Q7Y1I7           163 GRIENWAISGYD--EGa-AVIWVSTETSDYKCVKPASSYRSYFEHFSE-KARVCVEVYKKLARSvggnpQ--VDLEELIA 236  Japanese rice
P34881           136 GRVEHWSISGYE--DGs-PVIWISTELADYDCRKPAASYRKVYDYFYE-KARASVAVYKKLSKSsggdpD--IGLEELLA 209  thale cress
XP_009117317     142 GRVENWSISGYD--DGy-PVVWFSTELADYDCGKPATSYKKMYDYFYQ-KAFASVEVYKRVAKSag--gDsgVSLDELLV 215  field mustard
XP_006359979     488 SAIKEWMIEFGS--SM--IFISIRTDMAWYRLGKPLKQYAPWYEPVIK-TARLAVSIITLLKEQnr-vaR--LSFGEVIK 559  potato
5YDR_B           181 KIE 183  human
Q9M0S8           513 RLC 515  thale cress
jgi:OSTLU_29004  191 IIL 193  Ostreococcus lucimarinus CCE9901
jgi:OSTLU_16926  368 ELL 370  Ostreococcus lucimarinus CCE9901
O74560           144 VLK 146  Schizosaccharomyces pombe 972h-
Q6Z978           134 GVF 136  Japanese rice
Q7Y1I7           237 GVV 239  Japanese rice
P34881           210 AVV 212  thale cress
XP_009117317     216 AVS 218  field mustard
XP_006359979     560 RVS 562  potato
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