Conserved Protein Domain Family
SnAPC_2_like

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pfam11035: SnAPC_2_like (this model, PSSM-Id:371351 is obsolete and has been replaced by 463210)
Small nuclear RNA activating complex subunit 2, SNAP190 Myb
This family of proteins is snRNA-activating protein complex subunit 2 (SnAPC subunit 2). SnAPC complex allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element, the TATA box. The family functions both to specifically recognize the proximal sequence element present in the core promoters of human snRNA genes and to stimulate TBP recognition of the neighboring TATA box present in human U6 snRNA promoters.
Statistics
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PSSM-Id: 371351
Aligned: 18 rows
Threshold Bit Score: 241.556
Created: 2-May-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
XP_001923727   1 MKPPRRQRTVPSRFHKtpeqEqidSARSLCkgWNRKDLHSFLQALkQQQDFES----EIDLTEIQK-KIPQR---SLKQI 72  zebrafish
XP_001376853   1 MKPPLRRRAAPARYRGlapaA---VRTGSL--WTPREKQQLLRLL-QALDGET----EPAAAELRQ-GLPHR---SEAEI 66  gray short-tail...
ETE73384       1 MKPPSRLRSAPARFRL----------DPAVrvWTDREKRRLLQAL-RAQAQTP----GPLRPEQLKkYLPSR---NEDEI 62  king cobra
XP_008107661   1 MKPPSRPRSAPARYHL----------GPVSriWTDREKRRLLRGL-RAQAQAP----GPLRLEVLKkYLPSR---GEDEI 62  green anole
Q3T0I6         1 MKPPQRRRAIPRRYLV----E---VTGPAA--WRASEKRQLLRLL-QARQGQP----ELDAAELAR-ELPGR---SNTEI 62  cattle
XP_003123246   1 MKPPQRRRAAPARYLG----E---VTRPAA--WSAREKRQLLRLL-QARRGQP----EPDAAELAR-ELSGR---SDAEV 62  pig
XP_022534077   1 MKPPVRQRVKSTRLLGvkrtE---TKRSVSnsWYKKEQQSLIQGLsQQLRSNA----VPDLLELQK-RVPKR---SLLEI 69  Mexican tetra
XP_005800147   1 MKPPPRNRTKRQLSCWtetpE---SRRKAAckWGRPELKKLLKAL-QALSQTTgglqEIDYAVLKK-HIPTR---SISEI 72  southern platyfish
XP_023352683   1 mkppvrrraaparyrGlaptG---VRTATL--WTAREKQQLLRLL-QAQDVER----EPAAADLRQ-GLPHR---SEAEI 66  Tasmanian devil
XP_003421329   1 MKPPQRQRVAPARYLG----V---ATGPAA--WSVREKRQLLRLL-QARRGQP----EPNAAELAR----GLpgrSEDEI 62  African savanna...
XP_001923727  73 ENLINKVKLRVLQKVFKQVks-----qRKKERKAKVPIETWGEMVQKISTSHGKTISAAFSQMLVVAATEPCSLMHSEPP 147 zebrafish
XP_001376853  67 QDFLQSLKRRVAREVIQQEhrccqkeqRLHKTQVPAPIEVWTDLAEKVTSQLEEAMTTAFSQILTIAATEPVSLLHSIPE 146 gray short-tail...
ETE73384      63 LAFVDLLKERVAREAVKAQyry--rqcKEKDAPIPAPIEVWIRLAKKLTGCLEDAVTAAFSQVLTIASAEPLSLLHSVPP 140 king cobra
XP_008107661  63 MKFVDLLKERVAKEVVKAQfry--hqcKQKDAPVPAPIEVWTALAEKMTGCLEDAVTAAFSQVLTIASTEPLCLLHSVPP 140 green anole
Q3T0I6        63 QDFIRQLKGRVAREAIQRIhpggpkgpRRWETQTPAPIEVWMDLAEKITGPLEEALTVAFSQVLAIAATEPVSLLHSVPS 142 cattle
XP_003123246  63 QDFLRQLKRRVAREAIQRMypggpqglRRQEAQPPAPIEVWMDLAEKVTGPLEESLTVAFSQVLTIAATEPISLLHSKPP 142 pig
XP_022534077  70 QNLLKSLKASLARRVHHCVrk-----qIHEEQKSKVPIELWDELAHKMAAVHEETISTAFSQMLVIAATEPLSQLHSVPS 144 Mexican tetra
XP_005800147  73 SAMVDSLKNKTISSARFQLqm-----kNWEEKQFRRPIEEWTHMASTLAGTLEKVISAAFSQMLVVSSTEPCTLRNCDPK 147 southern platyfish
XP_023352683  67 QDFLQSLKRRVAREVIQQEhhccqkeqRCPKAEIPAPIEVWTDLAKKVTSQLEEAMTTAFSQILTIAATEPVSLLHSIPK 146 Tasmanian devil
XP_003421329  63 QDFLQQLKGRVAREAIQRLhpggplgrRR---QTPAPIEVWMDLAEKITGPLEEGLTAAFSQVLTIAATEPLSLLHSQPS 139 African savanna...
XP_001923727 148 hpvtqtpvfsrlypahtpnttsrpttsgvS----------------------------PS-------------SSVSTAS 186 zebrafish
XP_001376853 147 -----------------------------K----------------------------PT-------------QASERQL 156 gray short-tail...
ETE73384     141 -----------------------------K----------------------------PV-------------EVNAAQC 150 king cobra
XP_008107661 141 -----------------------------K----------------------------PM-------------EVKTTRC 150 green anole
Q3T0I6       143 -----------------------------K----------------------------PT-------------QACGKPL 152 cattle
XP_003123246 143 -----------------------------K----------------------------PT-------------QARGKQL 152 pig
XP_022534077 145 lqid----------------------lpsKvenklnstrgmangtsspsskkasslvqPS-------------SISSTKK 189 Mexican tetra
XP_005800147 148 q----------------------------D----------------------------PRpavgpvpcmpvkgERPSALL 171 southern platyfish
XP_023352683 147 -----------------------------K----------------------------LT-------------QASERQL 156 Tasmanian devil
XP_003421329 140 -----------------------------K----------------------------PT-------------QARGKLL 149 African savanna...
XP_001923727 187 AVSFIR-----------------------------PDSSssaaghigksdtvssslhqepVMPEAS------TPTSsssq 231 zebrafish
XP_001376853 157 LCKDSN-----------------------------PQEE---------------------LPPEAP------KPTQeasc 180 gray short-tail...
ETE73384     151 M-----------------------------------------------------------------------TPAVpskn 159 king cobra
XP_008107661 151 S-----------------------------------------------------------------------SPTLhnkn 159 green anole
Q3T0I6       153 LLRAPG-----------------------------GQED---------------------LGPEAS------SPAPeapg 176 cattle
XP_003123246 153 LLSAPG-----------------------------GQED---------------------KGPEAP------GPAPkvqg 176 pig
XP_022534077 190 KSNGTEassaesqasekvstptvpktnlcqtsvnqSETVs-------------------kIPPPAT------TPRAttvs 244 Mexican tetra
XP_005800147 172 L-----------------------------------------------------------MAPAPArsgsrrLPAPsqav 192 southern platyfish
XP_023352683 157 LCQESH-----------------------------SQGE---------------------APPQAP------EPTQetsg 180 Tasmanian devil
XP_003421329 150 LLNTPR-----------------------------CQEAsnp----------------gvPVPDTPgv--peAPVPdt-- 180 African savanna...
XP_001923727 232 sqseaeaavsspvssrPSPSTSSNKPSpisLEllghdypcKPRImksvVNFDKIYAYLSDMDSKTCSSALSSMECAVLLD 311 zebrafish
XP_001376853 181 gvp-------gtcdteVKTSHSECSSA---TN--------RNFV----IDFEKIYKYLSSISRSGKGLELSPGESAVLLD 238 gray short-tail...
ETE73384     160 mk--------snteseEATISSDVEQLtpaEN--------GELH----VDFEKIYKYLSVISRGSKAPELPPGESAVLLD 219 king cobra
XP_008107661 160 ks---------neetrEATVSSNGEELtpvKN--------GEFQ----VDFEKIYKYLSVISRGSKAPELPPGESAVLLD 218 green anole
Q3T0I6       177 ggevpgstlktpgpapEASSESLAGQS---AE--------GDFS----VDFEKIYTYLSSVSHGGQGPELSAAESAVVLD 241 cattle
XP_003123246 177 -------------papEASSESLAGPS---AE--------GEFS----VDFEKIYKYLSSISRSCHGPELSAAESAVVLD 228 pig
XP_022534077 245 ip---------pnskrQAKHRAHGQSKqahQQ--------RSVEkdstVDFGKIYKFMSNINTNKGRSTLTAMESAVLLD 307 Mexican tetra
XP_005800147 193 rgqtr--kilprlkqpAVPSAAAASTSt-sLtgcpdpaapllsetlpafvssgslkplapaasglssvsaaaqsavslcl 269 southern platyfish
XP_023352683 181 gds-------gpsgtpDKTDSSKSGPAa-pTN--------GNLV----IDFEKIYKYLSSISRSGKALELSPGESAVLLD 240 Tasmanian devil
XP_003421329 181 ---------------pEAPSKPPSGPS---SK--------EDFT----VDFEKIYKYLASFFRSGPGPELSPAESSVVLD 230 African savanna...
XP_001923727 312 LLMCLPEELPLLDCKGLQHHLLQLHSQLSKPTVK--PESYSNG--PLsg--------------------eANSSTS---- 363 zebrafish
XP_001376853 239 LLMSLPEELSHLPCEKLQTHMASSYRKLVRPQAGssPGHSDPGqaPTve--------------------dDEDGTS---- 294 gray short-tail...
ETE73384     220 LLLSLPEELSHLDYKKLKGHMYKCYLDLSAHYNNekSTRKSKIs-PLvn--------------------nSEDLPEtfyn 278 king cobra
XP_008107661 219 LLLSLPEELECLDFNKLKSHMYKCYRELNGRYTGnkNGTQAESs-QSvn--------------------sGRDQHDilfh 277 green anole
Q3T0I6       242 LLMALPEELSRLPCATLVQHMSGMYRHLTAPQRD--LASGGLA--SG-----------------------TEDSGA---- 290 cattle
XP_003123246 229 LLMALPEELSRLPCAALVEHMTDMYLHLMAPQPD--SANGSLG--SG-----------------------AEDGGS---- 277 pig
XP_022534077 308 LLMSLPEELPLLDCKELQHHLLQVHSSLTSEASVsdQRPSAAN--PAraegtdispqmqhlhtaagqnlqTEADTS---- 381 Mexican tetra
XP_005800147 270 pvssfssphstvplshaaaelpatflqsskhaavddpktvgvnfavdfekiykflsvvqnpsedynltpmesaivldllm 349 southern platyfish
XP_023352683 241 LLMSLPEELSRLPCEKLQAHMAGSYRKLMRPQQPsdPSHGDPGkgPSvp--------------------dGEGGTS---- 296 Tasmanian devil
XP_003421329 231 LLLSLPEELSHLPCTALAEHMTGAYLRLTAPEPS--LAKEGLG--PG-----------------------TEDMDA---- 279 African savanna...
XP_001923727 364 -----AQKPSAAAGSSEKh-------------gPVKDSEDWASAGICPLNPLSVPVTLLKRKSV 409 zebrafish
XP_001376853 295 -----TSNGPGRMGSPSPespassglncprdtlPSGQQQLWQELEFCPLNPFLIPLELLSRAAP 353 gray short-tailed opossum
ETE73384     279 vpsvgNSFSQEQEDTNSSasst--------svtASTSSTDWKTLGICPLNSFWFPLDILAQKke 334 king cobra
XP_008107661 278 -ihpnSSCCQQQEGANSHsssk--------ndeASSSAINWKTLGICPLNSFMFPLDLLTRKgd 332 green anole
Q3T0I6       291 -----GSRGQEETGQASPqape--------nagSSQPISSWQAAGVCPLNPFLVPLELLRQVAr 341 cattle
XP_003123246 278 -----GSRGQEEAGQATPqape--------nagPSEAISTWQAAGVCPLNPFLVPLELLGQAAT 328 pig
XP_022534077 382 -----AGTEQRNAGEMADdisgq-----pcpvnPPNDSDNWATSGLFPLNPFMFPISLLKRq-- 433 Mexican tetra
XP_005800147 350 slpeelhyldcknlqkhliqmyqslsapvcsmpakqlmsklqnarrvergpaaaaapapaaaad 413 southern platyfish
XP_023352683 297 -----GSRDPGSLESPPAespaa-----sgpspPSAQHQLWQDLEFCPLNPFLLPLELLSHRAA 350 Tasmanian devil
XP_003421329 280 -----GSRGHKEPGQATPqvse--------sagPSEPRSAWQAAGVCPLNPFLVPLELLGQAAT 330 African savanna elephant
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