6ICT,3QXY


Conserved Protein Domain Family
Rubis-subs-bind
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pfam09273: Rubis-subs-bind (this model, PSSM-Id:370401 is obsolete and has been replaced by 462737)
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Rubisco LSMT substrate-binding
Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex.
Links
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Statistics
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PSSM-Id: 370401
Aligned: 145 rows
Threshold Bit Score: 37.7561
Created: 3-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
6ICT_A         351 YAMKAEVLArag---------ipTSSv-FALHFTEPPISAQLLAFLRVFCM---------TEEELKEHLLG-DSAIDr-- 408  human
A0ECS5         307 FNLKISLTKgnmcwgn------------rlvnetdHDTFRQSLATVRFTQIsk-----ldDFLQLEEDVQNfkqfw-pgw 368  Paramecium t...
EER42283       270 FEQKHKLWEsagldltstisltlT-----------DPLPKNVLQYLRIQRS---------SESDLNTIALQ-Q--IDp-- 324  Histoplasma ...
EGX44442       270 FELKQKLWVsagldsvstislslN-----------DPLPKSVLQYLRIQRA---------DESDLAIIALQ-Q--IDa-- 324  Arthrobotrys...
23_pfamImport    1 YHEKTALLSangldhat-----------tpfeltaDELNELLLITVRIEEIec------dSVEQLEVLAAK-ALD----- 57  
EEY63917       293 YHEKEQLLLvngldhat-----------npfelvaEETNDLLLMATRIQEIdc------dTIDELETLAYK-ALD----- 349  Phytophthora...
15_pfamImport    4 FQEKEQLLLtngldhat-----------spfelvaDESNDLLLMAARIQEIdc------eTAEEFELLAQK-ALD----- 60  
31_pfamImport    6 FEEKEQLLLangldhat-----------nmfelvaDESNDLLLIAARIQEIdc------dTPEEFEVLAQK-ALD----- 62  
XP_004365514   420 GEAKLAILR--------------WHGlsLTHFLHNRSVPVELFSALRVLVMtpaeicmysTPQQADL------------- 472  Capsaspora o...
EGF82421       334 YTAKKAVLEv------------vSENdlSHLVFLKDDLPTNMISISRVLVA---------NSWELAILEARlTSSTKvsp 392  Batrachochyt...

6ICT_A         409 iFTlgnsefPVSWDNEVKLWTFLEDRASLLLKTYKTTI---EE--DKSVLKNHDLs---------------------vRA 462  human
A0ECS5         369 hTT------IKTIELEKATFKALKGILVTELGNFASTI---ED--DERRLNDPQTp---------------------eFR 416  Paramecium t...
EER42283       325 kYE------KISDSNEVKVLQSLIKSFCGLLDSFGTQL---EE-----------------------------------LE 360  Histoplasma ...
EGX44442       325 tDK------ILSNSNEEKVLQALIESFCELLHNFGTQM---EK-----------------------------------LD 360  Arthrobotrys...
23_pfamImport   58 -GE------VLSFDNEHMTLTRLIYTLQKMLDEFDGTL---ED--DDAKLREWAAqegelsdetgddgednnkkqsdvYE 125 
EEY63917       350 -GE------VVSLENEQQALTRLIYTLEQMLKAFPTSI---EE--DDELLGLN-------------------------HE 392  Phytophthora...
15_pfamImport   61 -GE------MVNLVNEHVALTRLIYTLEKLLEAFPESI---EE--DDKLLESWENdliqqdk---------dqsdslnHE 119 
31_pfamImport   63 -GE------MVSLANEQEALTRLVYTLEKMLEAFPTST---EE--DDKLLESWENdltkqgg---------ersdrlnHL 121 
XP_004365514   473 -TD------RVSLANETRMLRTLSTLLLTRLVQLGGES---RDgfDRGLLLQPSLd---------------------yHV 521  Capsaspora o...
EGF82421       393 hST------PICLHNEILALSTLYNLLNSKLKVLKSTTpnyEQ--DTIEFPNDDE-----------------------AR 441  Batrachochyt...

6ICT_A         463 K--------------MAIKLRLGE 472  human
A0ECS5         417 K--------------HIIMLTLRE 426  Paramecium tetraurelia
EER42283       361 EqlaegiyplggnawAAAHVSLGE 384  Histoplasma capsulatum H143
EGX44442       361 EqlaegfyppgtnawSAAHVSLGE 384  Arthrobotrys oligospora ATCC 24927
23_pfamImport  126 R--------------MAVIVRRSD 135 
EEY63917       393 R--------------MAVAVRRSD 402  Phytophthora infestans T30-4
15_pfamImport  120 R--------------MAVAVRRSD 129 
31_pfamImport  122 W--------------MAIATRRSD 131 
XP_004365514   522 R--------------LALTYRVGQ 531  Capsaspora owczarzaki ATCC 30864
EGF82421       442 K--------------LVHIYRAGQ 451  Batrachochytrium dendrobatidis JAM81
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