5A63


Conserved Protein Domain Family
Aph-1

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pfam06105: Aph-1 (this model, PSSM-Id:368748 is obsolete and has been replaced by 461830)
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Aph-1 protein
This family consists of several eukaryotic Aph-1 proteins.Gamma-secretase catalyzes the intramembrane proteolysis of Notch, beta-amyloid precursor protein, and other substrates as part of a new signaling paradigm and as a key step in the pathogenesis of Alzheimer's disease. It is thought that the presenilin heterodimer comprises the catalytic site and that a highly glycosylated form of nicastrin associates with it. Aph-1 and Pen-2, two membrane proteins genetically linked to gamma-secretase, associate directly with presenilin and nicastrin in the active protease complex. Co-expression of all four proteins leads to marked increases in presenilin heterodimers, full glycosylation of nicastrin, and enhanced gamma-secretase activity.
Statistics
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PSSM-Id: 368748
Aligned: 55 rows
Threshold Bit Score: 158.859
Created: 4-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5A63_C         3 AAVFFGCTFVAFGPAFALFLITVAGDPLRVIILVAGAFFW-LVSLLLASVVWF----ILVHVTD----RsdarlqyglLI 73  human
EGC31825       3 QVLFYGCLFITFSPILAFFFLVIAKNSQLVILTIGGSFFW-LVSILLSAIWWY----IIPPMRE----Q---------WW 64  Dictyostelium p...
CBK19561       6 LV---GSLLIAFGPSSIFYVTTVSRRPYLLVVSLFG-FLWsMLSFVLSGAIFSiwniWSTPP----------------LP 65  Blastocystis ho...
XP_003537942   3 VAAGIGYALVALGPSLSLFVSVISKKPFLILTVLSSTLLW-LISLIVLSGIWR----GVLPLST----Tas-----wpFG 68  soybean
Q8L9G7         3 VAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLW-LVSLIILSGLWR----PFLPLKA----Nvw-----wpYA 68  thale cress
XP_006347279   3 VAAGIGYALLALGPSLSLFIALISKKPFLILTLLSSTLVW-LMSLIVMSALWR----AFLPLKT----Taw-----wpYA 68  potato
XP_009416016   3 VAAGFGYVLISLGPALSLFVSVIAKKPFLILTLLASMLFW-LISLIVLSGAWR----GFLPLKS----Asw-----wpYV 68  wild Malaysian ...
EDQ64714       3 LVAGFGYFLIALGPALTIFGSSVAPKPFLILTVLASALVW-LASLNIAAIVWR----AFLPGPSw------------vFL 65  Physcomitrella ...
Q55FS3         3 QVLFYGCLFITFSPILAFFFMVIAKNSQLVILTIGGSFFW-LVSILIAAIWWY----IIPPMRE----H---------WW 64  Dictyostelium d...
XP_015623034   3 VAAGLGYALVALGPAFSLFAGVVARKPFLVLTLLTSTLFW-LISLIILSGIWR----VFLPIRSgawwP---------YA 68  Japanese rice
5A63_C        74 FGAAVSVLLQEVFRFAYYKLlkkADEGLASLSE--DGRSPISIRQM---------------------------------- 117 human
EGC31825      65 FTIPFAVVFQEAIRYLFYRL---YSWGFNDRPS--LNQIKETQHQMsldqmkkrkqvktsyqnenynndndnnnnnnndd 139 Dictyostelium p...
CBK19561      66 VSMVLSILFFELLRPFVYKFmnfSCKKLNEVDIplSITAPTELFKL---------------------------------- 111 Blastocystis ho...
XP_003537942  69 ILIFSSVAFQEALRLFFWKIykrLEDMLDAFAD------RVSKPHLhltd------------------------------ 112 soybean
Q8L9G7        69 LLVITSVCFQEGLRFLFWKVykrLEDVLDSFAD------RISRPRLfltd------------------------------ 112 thale cress
XP_006347279  69 ILILTSVGFQEGLRILFWKVykkLEDILDAFAD------RVSKPRLfmtd------------------------------ 112 potato
XP_009416016  69 ILIVTSVGFQEATRLIFWKLykkLEVILDAFAE------EKFRSRLswtd------------------------------ 112 wild Malaysian ...
EDQ64714      66 LILTTSVALQEAFRLLYWHLylkIEKYLNVLAT------KLSKPQCnyld------------------------------ 109 Physcomitrella ...
Q55FS3        65 FIISFSVLFQEIFRYIFFRL---YSYGFNDRPS--LNQIKETQHQMaldsmrkrkqaqqqkqqpptneiesinneiidtt 139 Dictyostelium d...
XP_015623034  69 ILILTSVAFQEGIRLVFWRLykkMEEMLDSFAD------RISKPRLcltd------------------------------ 112 Japanese rice
5A63_C       118 ----------------------------------------------------------AYVSGLSFGIISGVFSVINILA 139 human
EGC31825     140 dtfsidn-----------kndsdendndkseskesdkaevvinnrletlsarpnhtlsATAIGVGNGTAYGFIMFGSILW 208 Dictyostelium p...
CBK19561     112 ----------------------------------------------------------SVCAGMGTGLLTVFSIALVPLT 133 Blastocystis ho...
XP_003537942 113 ------------------------------------------------------kmliALAGGLGHGVAHAVFFCISLLT 138 soybean
Q8L9G7       113 ------------------------------------------------------klqiALAGGLGHGVAHAVFFCLSLLT 138 thale cress
XP_006347279 113 ------------------------------------------------------kmqiALAGGLGHGVAHAVFFCLGLLT 138 potato
XP_009416016 113 ------------------------------------------------------kmqiALAGGLGHGVAHAVFFCVSLLT 138 wild Malaysian ...
EDQ64714     110 ------------------------------------------------------rleiALASGVGHGLAHAVFFGLSIIA 135 Physcomitrella ...
Q55FS3       140 nnntnnnnnnnnnindddnkeiteeekekrkiekqkqreieinarletlsarpnhtlsSAAIGVGSGVAYGFIMFGSILW 219 Dictyostelium d...
XP_015623034 113 ------------------------------------------------------kmliSLAGGLGHGVAHAVFFCLSLLT 138 Japanese rice
5A63_C       140 DALGPGVVGIHG-DSPYYFLTSAFLTAAIILLHTFWGVVFFDACERRRYWALGLVV-GSHLLTSGLTFLNP-----WYEA 212 human
EGC31825     209 ESTGPGTMFSPAcPTVNLFMLSSIITLCMTILHVVYNVLAFQGYRSRKYHLVVYVV-IVHFLTSFLTLLNQps--kSCIG 285 Dictyostelium p...
CBK19561     134 SAGYAADYYMPQcNCMSLYVVIAIESLCVMPLHVLWTYLTLRAYSSKY-WPTAIVVcILHLLQGCVTLLNQvssgcIYAV 212 Blastocystis ho...
XP_003537942 139 PAFGPATYFVDRcSRVPFFLLSAIIALAFVIIHTFSMVIAFNGYTEGNKVDQYFVP-IVHVVAGMVTLVNLapggcAVGI 217 soybean
Q8L9G7       139 PAFGPATFYVERcSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVP-VIHLTAGMLTLVNFasegcVIGV 217 thale cress
XP_006347279 139 PAFGPATYYVEKcSKIPFFLVSAIIALAFATIHTFSMVIAFSGYEEGNKVDQCFAP-VVHLIAGMLTLTNLafggcMIGI 217 potato
XP_009416016 139 PSFGPATFFVDRcSHMPFFLVSAIISLGFMIIHTFSMVIAFNAYAEGRKLDQIIIP-IIHILAAVMTLINLapggcAIGV 217 wild Malaysian ...
EDQ64714     136 PAFGPATYYTSScKQMPLFLVSALSSLAFFLLHTFSMVIAFNAYTYDNISQKLFVP-IMHLGAALLTLVNLlpngcTAGV 214 Physcomitrella ...
Q55FS3       220 ESTGPGTLFSPAcPSVNLFMLSSIITLFMTLLHVVYNVLAFQGYRSKKYHLVAFVI-ITHFVTTYLTLLNLptkttSCVG 298 Dictyostelium d...
XP_015623034 139 PAFGRATFYVEKcSRMPFFLVSAIISLGFLVIHTFSMIIAFNGYDERKRSDQVFVP-VVHLIASVMTLINLapggcVIGT 217 Japanese rice
5A63_C       213 SLLPIYAVTVS--MGLWAFITAG 233 human
EGC31825     286 SVLPISLITIF--SVCFCLYSLl 306 Dictyostelium purpureum
CBK19561     213 VILVVLALAAIlvLSKLVAnscq 235 Blastocystis hominis
XP_003537942 218 PLLYLVAILTLihCGRMVWrklt 240 soybean
Q8L9G7       218 PLLYLVASLTLvhCGKMVWQRLL 240 thale cress
XP_006347279 218 PLLYCVAIVTLvhCGKMAWrrli 240 potato
XP_009416016 218 PLLYIIGGVVLrhCWQMVWrklt 240 wild Malaysian banana
EDQ64714     215 PLVFLCTALTMayGGKIVWhnlg 237 Physcomitrella patens
Q55FS3       299 SILPIGIITVF--SVGFCIFSLL 319 Dictyostelium discoideum
XP_015623034 218 PLLCVMGAVTLqyCWQMVWRRLs 240 Japanese rice
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