2LMD


Conserved Protein Domain Family
HPD

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pfam05044: HPD (this model, PSSM-Id:368261 is obsolete and has been replaced by 461534)
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Homeo-prospero domain
Prospero is a large drosophila transcription factor protein that is expressed in all neural lineages of drosophila embryos. It is needed for correct expression of several neural proteins and in determining the cell fates of neural stem cells. homologs of prospero are found in a wide range of animals including humans with the highest level of similarity being found in the C-terminal 160 amino acids. This region was identified as containing an atypical homeobox domain followed by a prospero domain. However, the structure shows that these two regions form a single stable structural domain as defined here. This homeo-prospero domain binds to DNA.
Statistics
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PSSM-Id: 368261
Aligned: 21 rows
Threshold Bit Score: 264.94
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2LMD_A         16 GLSPNHLKKAKLMFFYTRYPSSNMLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQMEKYARQAINDGVTSTEELSITRD 95   human
CDS30248      152 lLSSGHLRKAKLMFLYSRYPNSTYLKSFFPEVKFNRYNTAQLVKWFSNFREYFYINIERYVRKLIAEGVQSSECIRITPK 231  Hymenolepis m...
GAA51489       74 ILSASHLKRAKMMFLYARYPNSSMLKSHFPDVIFTRATTAQMVKWFSNFREFFYIQIEKWARQCNANRCPVELAVKITRG 153  Clonorchis si...
XP_018646037  369 TLSAAHLKKAKMMFMYSRYPTSSLLKSYFPEVCFNRGSTAQLVKWFSNFREFFYIQIEKFVRQQKATGLKKADDIRLSRE 448  Schistosoma m...
CAP39453      467 MLTPMHLRKAKLMFFYTRYPSSNLLKSYFPDIRFNKNNTAQLVKWFSNFREFYYIQMEKFARQALSEGISDRSEIFVSKD 546  Caenorhabditi...
EFV53283      574 TLTPMHLRKAKLMFFYTRYPSSVLLKAFFPDIRFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVSEGARSEADITVSVD 653  Trichinella s...
EKC41624       24 TLTPMHLRKAKLMFFYVRYPSSAILKVYFPDVKFNKNNTAQLVKWFSNFREFYYIQMEKYARQAIAEGCKSIDDLVVTTE 103  Pacific oyster
CDS34918      452 TLTPVHLRKAKLMFFYTRYPNSNLLRSYFIDVEFQKHNTAQLVKWFSNFREFYYITIDKTARQAISQGIRDQLELTVTTD 531  Hymenolepis m...
EEB14930     1075 TLTPMHLRKAKLMFFWVRYPSSAVLKMYFPDIMFNKNNTAQLVKWFSNFREFYYIQMEKYARQAVSEGIKNAEDIHVSAD 1154 human body louse
EFX75472      830 TLTPMHLRKAKLMFFWCRYPSSSVLKTFFPDVNFNKNNTAQLVKWFSNFREFYYIQMEKYSRQLLSEGVVNADDIHVSPD 909  common water ...
2LMD_A         96 CELYRALNMHYNKANDFEVPERFLEVAQITLREFFNAIIAGKDVDPSWKKAIYKVICKLDSEVPEIFKSPNC 167  human
CDS30248      232 HALYRTLIGHYNRGIETDIPSEFCQVVERTVIEFLMTIISEPDSHSAWKKKIYKTIAKLDQPIPEKFRNSHF 303  Hymenolepis microstoma
GAA51489      154 HELFQCLEGHYNRDQELPTPEDFLVVTQIAVQEFVEAVVNRKDRDPTWKKNIYKTVALLDKPFPDFLKflkl 225  Clonorchis sinensis
XP_018646037  449 HELIRSMETHFNKGDEIETPKEFLEAIQITVWEFADAILNERDVNSSWKKTIYKKISILDIQFPEFFRc--- 517  Schistosoma mansoni
CAP39453      547 SELFKVLNTHYNRNNHIKAPDRLVLVVQETLREFYDAIKLGKDAEPSWKKTIYKIINRLDDQIPDFFKEPNF 618  Caenorhabditis briggsae
EFV53283      654 SELYKVLNLHYNRNNHVQAPASFRRVVEATLHEFFNAVLSGRDAEPSWKKSIYKVIARMDDQIPEYFKSPNF 725  Trichinella spiralis
EKC41624      104 SELYRVLNLHYNRNNQIEVPDNFRIVVQATLREFYKSIVACKDSEPSWKKAIYKVIARMDDSLPEYFKSPNW 175  Pacific oyster
CDS34918      532 SEIYRTLVQHYNRNQQIEVPDEFRVVIERTLREFFMAILAGKDAEQSWKKPIYKVIARMDQSIPDFFRDPAW 603  Hymenolepis microstoma
EEB14930     1155 SEIYRVLNLHYNRNNHIEVPSNFRFVVEQTLREFFKAIQTGKDTEQSWKKSIYKIISRMDDPVPDYFKSPNF 1226 human body louse
EFX75472      910 SELFRALNLHYNRNNHIEVPAPFVFVVSETLREFFKAIQAGKDSEPSWKKAIYKIIARLDEQVPEYFRTPNF 981  common water flea
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