5HB3,2QX5,5IJN


Conserved Protein Domain Family
Nic96

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pfam04097: Nic96 (this model, PSSM-Id:367811 is obsolete and has been replaced by 461172)
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Nup93/Nic96
Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1. The structure of Nic96 has revealed a mostly alpha helical structure.
Statistics
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PSSM-Id: 367811
Aligned: 113 rows
Threshold Bit Score: 207.06
Created: 5-May-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
5HB3_A               50 HIVEAYRAV-MEMVGEHPdag----------------eaPRERQFAKmyld--pntqSANALAMRKQILKGATTFLEKQF 110 Chaetomi...
CAM44024            301 DLTVLWASI------------------------------VQIIEPMQ----------RRGSEVDILSYVASSRRVMERKS 340 Leishman...
XP_004984390        260 TMQKMWHLI-QALVGEGS---------------------------------------THRNVSRKMSLVIGARHHLEWGH 299 foxtail ...
2_pfamImport          7 NMQKIWHLV-QTLVGENTt--------------------------------------MQPIVSRKMSLVIGARRHLEWGH 47 
XP_003543674        249 TMRKIWHLV-QMLMGEDS---------------------------------------AVQCVSKRMSLIIGARRHLEWGH 288 soybean
5_pfamImport          7 AVLKCWQLLgNMVAGGDVktr---------------sagLYEREFAK-----------TDAQQLQHRFAFGARVFLESQF 60 
EDP43824            250 ALLDAWVAL-KHMVHESqada--------------iptpVRAREYAPvymdvdafqcTPAGTALREKWVRGARAFLEAQF 314 Malassez...
10_pfamImport         5 LLWQSFNLL-AHLVYEPSlrdseyrgsshseavppvaepVNERQYSAaylg---dqkAHQAALLRGRLVTGGLKYLERDF 80 
WGS:AACS:CC1G_12190 225 QMTQNFHVL-SKITSEPPalppieha-----gahilntpLFERKYARvylg---nsdSREAAALRQQIAKGSREALEEQY 295 Coprinop...
XP_009384164        250 TMQKIWHLI-QALVGEYSn--------------------------------------NRQKFSRKMSLVIGARRHLEWGH 290 wild Mal...
5HB3_A              111 WNEVNSLIAKYPQDANLGGLPDVVSKIKAYIRLRiar-ktLVPDNVELQQIn----GEYV-WAIVFYLLRAGFVTEAAQY 184 Chaetomi...
CAM44024            341 LSRLLERMLR-------------MDPIR-FEEV-------ENLSASHLLDIiarscGATNhWMHAFVAMRVGRYDVAQLA 399 Leishman...
XP_004984390        300 EKYILETINSHPALAALGGSVGNLQKIRAFMRVRlrdqgvLDFDATDLRRQppvdtT----WQQIYFCLRTGYYDEARQV 375 foxtail ...
2_pfamImport         48 EKYIMDTIQNHPAKAALGGAVGNLQRVHAFLRIRlrdygvLDFDAGDTHRQppvdtT----WQQIYICLRTGYYEEARTV 123
XP_003543674        289 EKYIMDTIQSHPAQAALGGGVGNLQRIRAFLRIRlrdygvLDFDAGDARRQppvdtT----WQQIYFCLRSGYYDEARNV 364 soybean
5_pfamImport         61 RSFVYQTVQK--NHLATGGVPDLVSNVRAFVRYLqssryaANGSSDNTDL------DANI-WALLYYCIRSGGDQEAIDL 131
EDP43824            315 AEYVEQVIASNPLKAQRGGVPSARATAAAFLRVQlrt-aeGAWPTGLSRPLda-htHVPL-WALVYHLVRMGHTSEALTC 391 Malassez...
10_pfamImport        81 ERHVDETIARNPKEAALGGVPGIRNKVRAFVDVTlrt--keAREAYKPESVn----GTLL-WAQTYYLVRCGYIDDALNL 153
WGS:AACS:CC1G_12190 296 WDVLERTVQARPAEAKLGGDPSVANKVRAFLLVRyyr-ngEWEDRIEIIA------GQPI-WAKLFYLVRTGHVREALNE 367 Coprinop...
XP_009384164        291 EKYILDMIKTHPSQAALGGAVGNLEKIQAFLRVRlrdhgmLDFDTTDIRRQppidtT----WQQIYYCLRTGYYDEAKKV 366 wild Mal...
5HB3_A              185 Vns-nQAHFRAIdRTFSGYIN-------SYASSE---------------ERRL-KRQMQDRCMSEYNQ---RIR-NaPEg 236 Chaetomi...
CAM44024            400 TdaigIQSVRDAvAKVA-----------AAPPAE---------------RNTMpPASDLQPVYAE------------AKt 441 Leishman...
XP_004984390        376 Aqs------sRAaHNFAPLLA-------DWISTNgavsqdtalaaseecDKML------------------RMGdRpGRp 424 foxtail ...
2_pfamImport        124 Als------sRAsHRFAPMLM-------EWINSGgmvpadiaaaaseecEKML------------------RMGdRvGRa 172
XP_003543674        365 Aqs------sRTsHQFAPLLT-------EWINKGgmvpeeiataaseecERML------------------RTGdRvGRt 413 soybean
5_pfamImport        132 VnssiRTGDAAIdANVLAGLKyrvhqkrAYADRD---------------APPL--SAFSKQFPSEYEKlvdRYH-RlTSa 193
EDP43824            392 Vqd-nEDALQVSdSSFLAFFK-------AWADDA---------------QRQL-PRSMRDHWMGEYVT---RFR-Nm-Ap 442 Malassez...
10_pfamImport       154 Vae-nQQHISRDdWSFPGCFK-------SAMQSP---------------ERRL-SKTQRDQLYNDFNA---HIR-N-NPl 204
WGS:AACS:CC1G_12190 368 Alq-fQQAIEHRePSFIGHFR-------TWIEST---------------DRKL-PKPHRDHLQAVYNA---HML-HsSTv 419 Coprinop...
XP_009384164        367 Aes------sRAaHQFAPQLA-------EWIASGgsvspetaavaseecEKLL------------------RMGdRaGRp 415 wild Mal...
5HB3_A              237 siD------PFRMACYKIIGRC---------DLsnRSLD-GLQTDVNDWIWLQFNLARETDRslel------ageS---Y 291 Chaetomi...
CAM44024            442 keD------PYRQAVLIVLLAGrtgenpavvLRtlLNLAqRVTDSLEDALWLRLSCIRGVDKsaqvsp--vqslrTlqrA 513 Leishman...
XP_004984390        425 gyD------RKKLLLYAIICGCrrqidrllkDLp------TLFNTIEDFLWFKLSALREHNNassss----vlneGlvpY 488 foxtail ...
2_pfamImport        173 ayD------KKKLLLYAIVSGSrrqidhllrDLp------TLFNTIEDFLWFKLSAVQEYHGgtssq----vlneSlvpY 236
XP_003543674        414 ayD------KKKLLLYAIISGSrrhidrllrDQp------SLFSTIEDFLWFKLSAVRDCPSgpssi----vlsdGlipY 477 soybean
5_pfamImport        194 siDaisvvnPYERCVINLL--C---------FGnpNASEpRILTTIEDYLWQRLCFIQRVAAsssa---------pdsaY 253
EDP43824            443 -eD------PYRYALYRLMGRF---------DVtkKFPA-PLVMSTENWLWLQLCLVSESAAaaepadvqaptlqT---Y 502 Malassez...
10_pfamImport       205 -iD------QFKAALYKLVGRF---------ELnrKTAK--VATTTEDWMWLQLNLVRENRDgda-------pqeQ---Y 256
WGS:AACS:CC1G_12190 420 --D------PFKLALYKLIGKI---------EPnrRSVP-QVTTTTEDWLWFQLSMLDEEEN-----------------G 464 Coprinop...
XP_009384164        416 gyD------RKKLLLYAIISGSrrqverllrDVp------SLFGTIEDFLWFKLSAIRDCPGgsssi----vlseGlvpY 479 wild Mal...
5HB3_A              292 GLAELQASIR-EIGLKHF--PKtaaedtN-----GSFGMFFYLQI----LAGMFEQAIAYLYP---FS--YVDAVHFAIA 354 Chaetomi...
CAM44024            514 VLDDMQELVSiTQGNAY-----------------RLASFFIHALLpstgLRLLLENSIT-----------HVDGFHMTLC 565 Leishman...
XP_004984390        489 TLDDLQSYLN-KFEPSYYtkSG------------KDPLIYPYVLF----LSIQLLPAILYLSKeigEDgyHVDAVHISIA 551 foxtail ...
2_pfamImport        237 SLEDLQAYLN-KFEPSYYtkNG------------KDPLVYPYVLL----LSVQMLPAILYLSKeaaDDgyNINAVHVSIA 299
XP_003543674        478 SLDDLQSYLN-KFEPSYYtkNG------------KDPLVYPYILL----LSIQLLPAVLYLSKeagDEgyNIDAAHLSIV 540 soybean
5_pfamImport        254 TISRLAKSIQ-KFGPAHFegSR------QpgggnLSAFLYFEILL----ITQEFEKALKYLAS----KgfLLEAVHFAVT 318
EDP43824            503 TLHDLANKLE-KYGEAHF--DP------Kg----HRPLHYFQLLV----LVGRFENAIAFLHS---RAayQVDAIHFAIA 562 Malassez...
10_pfamImport       257 DLADLGRLLE-KYGSDKF--DA------Gg----TKPLAWFNLLL----FTAQFEKAVAYLYSk-pQM--KTDAVHFAIA 316
WGS:AACS:CC1G_12190 465 GLGTLTEVLL-GYGERHF--DG------PpghpnSRRGVWAGVLL----MCGQFERAVAALWD---HPetEIEAVHLAIA 528 Coprinop...
XP_009384164        480 NLDDLQGYLN-KFEPSYYtkNG------------KDPLVYPYVLL----LSIQFLPAVLYLFKevgEEgyNVDAVHISIA 542 wild Mal...
5HB3_A              355 LTYYGLLRP---VDAaSAg-NELLSHNTRs-mPQINFGRMLGYY-TRDFRAANPAAAVDYLVLICLNADEaagGQqa--- 425 Chaetomi...
CAM44024            566 FNAQNLLQGrlhSALeAP----------------IDIARHMSRYcSVVLLDVDRRIRATVFAGTAMFA------------ 617 Leishman...
XP_004984390        552 LADHGVLPDgvgSGQkIGvm-----------dACAEAASIIRQYgSIYLRSGNIDLALEYYAQAAAAMGGg--EVswigq 618 foxtail ...
2_pfamImport        300 LADHGVLTEgagAGQkLGvm-----------dAYAEVASIIRQYgSAYLRHGNLSMALEYYAQAAATVGGg--EAswtgr 366
XP_003543674        541 LADHGVLSEgagSGQkLGvm-----------dAYAEVSTIIRQYgSMYLRLGDLQMALEYFAQAAAAVGGg--ELswtgr 607 soybean
5_pfamImport        319 LNHYGLLRT---SSFgMEee----------ddTNIDLVRLLRQY-IHAFQRTDACEAAEYVACISDS------------- 371
EDP43824            563 LTYYGLLRV---SRAsQApsFDYLTTIDHv--AYLDLAKMLRRFiGSTFAQASRRDALAYMSVLCLNADC---APpig-- 632 Malassez...
10_pfamImport       317 LSYYGLLRV---PTKgDE--AELLAVTDSgdvSFLNFARIIKQY-IAPFFKLEPQTALQYAYLVMLNSDA---PApsg-- 385
WGS:AACS:CC1G_12190 529 LAYHGLLRV---PPRaETsdMSPLTLSPAs-pPALSLSTLIWRY-VRQFVKMDAKEALQYVYCVCLSADQ---GNgvg-- 598 Coprinop...
XP_009384164        543 LADNGVLSDgigTDRkIGvm-----------dACAEVASIIRQYgSVYLRQGNLELALEYYAQAAAAMGGg--EVswigr 609 wild Mal...
5HB3_A              426 -------qA-ALCHEALRE-LVLES--RE--FSRLIGDIRP-DGRRIRGVIEErgplIALgqeDdfIRTITLQAASFADD 491 Chaetomi...
CAM44024            618 ----------YFHKSGLTE-AFVECclKDliCARLLGPRNTvGG------HDSlllrAGTgalSeeLLKALIQVAEAASA 680 Leishman...
XP_004984390        619 gnadqqrqRsLMLKQLLTE-ILL----RDggIQLLLGPS----GMGEEGELKKymmdWRS------RQQFLLEAAHRCQE 683 foxtail ...
2_pfamImport        367 gnidqqrqRsMMLKQLLTE-LLL----RDggIHLLLGPR----GAGEEGELARfltdSKE------RQQFLLEAARKCQE 431
XP_003543674        608 gnvdqqrqRnLMVKQLLTE-LLL----RDggIYLLLGAR----GTGEEGELGRfvtdPKA------RQQFLIEAACQCQE 672 soybean
5_pfamImport        372 ----------TAKKELLAE-LLLET--RK--FDVLAGFTNNtDGCRTRGVIDR----LLKdepEdeIKELILNAARKAEA 432
EDP43824            633 -----aeqV-ERCHELVQA-LLLES--PAsaYAELLGDIKS-DDIRAPGLIEQqgplLHLtdrAtlLHDVLLPAAEQCVR 702 Malassez...
10_pfamImport       386 -----pkqR-QLCLELVRD-IVLSS--RS--WSRLLGSVRS-DGSKETGVIERdlklLKLedeQdyLRQVVLAAADQSSL 453
WGS:AACS:CC1G_12190 599 -----reqV-ESAWDLTRRiIVLAN--SGpgWEELVGGFRA-DGTRFSGVIEQgaslLHLhdsKeyNQEILIRAARHSEE 669 Coprinop...
XP_009384164        610 gssdqqrqRnMMLRQLLTE-VLL----QDggISLLLGPR----GTGEEGALSKyimdWNS------RQQFLLEAARQCQE 674 wild Mal...
5HB3_A              492 NGRTTDAVLLYHLAE--------------DYDTVVSIVSRALSEAISl----EigedpmrliPVKPRVTNAEGQVEeaap 553 Chaetomi...
CAM44024            681 RSEVAKATHVLLAVAclanqlhrpelqqrALRRAVQIMSPALAQVLH-----L---------PSRSSVVSDVLSQA---- 742 Leishman...
XP_004984390        684 AGLYDKAVEIHKRVG--------------DFAMALQIINKCLSDAVC-------------------AMARNMLDGE---- 726 foxtail ...
2_pfamImport        432 AGLDEKSIEIQKRVG--------------AFSMALDTINKCLSEAIC-------------------ALSRGRLDSE---- 474
XP_003543674        673 AGMYDKSIEIQKRVG--------------SFSTALDTINKCLSEAIC-------------------ALFRGRLDGE---- 715 soybean
5_pfamImport        433 RGRPHDSFVLLKSAG--------------DIEGVIVLLNNQLSSTLAaprperee------------------------- 473
EDP43824            703 EQRMTDAILLYNYAQ--------------ERDTVMSVLNRELSTTLm-----E------------PADLSDWSlpveegm 751 Malassez...
10_pfamImport       454 DSSLTDSIELYHLAG--------------SYDKVVETVNRALGHSLSqtagtA---------PLPSDAAQVGLTGAfgga 510
WGS:AACS:CC1G_12190 670 NDRISEAIKLYNLAG--------------DYATVVSCLANALGKTIAq----Tspdeks--------------------- 710 Coprinop...
XP_009384164        675 AGLYDKSVEIHKRVG--------------AFSVALETVNKCLSDVIC-------------------AMSRGRLDGE---- 717 wild Mal...
5HB3_A              554 gsslslaaiddpvelAKA---------MMG--MYERDhMFw-qKIREPNRVACSVLLQMADIKSLVEQGRWAECLDKIRA 621 Chaetomi...
CAM44024            743 ---------------AQL---------QQA--VNAVPhHLhdeAVGAQDYQTFAQLCRMADVYAFNVNGNVSDAVDTFLQ 796 Leishman...
XP_004984390        727 ---------------SRAtalihsgneIMEtaRYSSEtSVqdkDLISEQQTVLRQLEAILHIYRLARAGQTVDALRETIR 791 foxtail ...
2_pfamImport        475 ---------------SWTaglinsgneILEtfKYYPNeSFqerGHVIEQETVLRQLEATLSVHKLARMGHYLDALRELAK 539
XP_003543674        716 ---------------SRTaglihsgneILEtySYYPDvRLqerEHVFDQQTVLRQLESILSIHKLARLGHYLDALREVAK 780 soybean
5_pfamImport        474 -------wfrlakdfAEKwmrfpwvqaIAN--RYARTaAI-----------AFQTLLNISIFLEIFEKQQYEDAIRFVDE 533
EDP43824            752 vpl---tssahivtlARA---------VLA--NYEQQ------GHTSAQMQVCHTLLDLKRAASLYRAEQLPAALQVLET 811 Malassez...
10_pfamImport       511 p---------dlyslAQK---------VHA--VYERDfGKr-tRVSSLHWETLETLLQLKLALAQFAADRPDLALETFKA 569
WGS:AACS:CC1G_12190 711 ---------rvvektAGE---------ILR--HYERTn-----RAVGKDRDAVIKLLKIREAVEAKNAGKPDVALEIIES 765 Coprinop...
XP_009384164        718 ---------------SRAasliqsgndILEnfKYSSGvSLqekEPVSEQQTVLRQLEAILHISKLARAGQHVDALREIIK 782 wild Mal...
5HB3_A              622 LDILPLta--rgDP-GTIRSYAARFPS-LAQPVAINVPNLLMWTVLCCMRQRERLagGQFAgNESTArl--mMDELKQMT 695 Chaetomi...
CAM44024            797 LPFVPPpn---tAVtGGVDAYVEAYCN-APGSVQLGASAALRVAISAAGQLLQYYarn---stGDSAdvddkRLRLLHRM 869 Leishman...
XP_004984390        792 LPFLHL------DP-QSPNVTVDIFRN-LSPHVQACIPDLLKVALNCI---------------DNVRdtdgtLRAVKSKI 848 foxtail ...
2_pfamImport        540 LPFLPF------NP-RVPDVTVDALQN-LSLHVQACVPYLLKVALTCL---------------DNVTdsdgsLRAMRAKI 596
XP_003543674        781 LPFLPL------DP-RGPDIAVDVLEN-LSPHVQACIPDLLKTALTCL---------------DNVTdsdgsLRALRAKI 837 soybean
5_pfamImport        534 LDVIPT------QDaNNLALCVDRFLA-FDETVRQNFHILLLGYVECLVREAERTkv-----qSTGEmrrlaVHALRGKA 601
EDP43824            812 LRLLPLdaesrkDV-MSITRKAEEFKA-YDDTITKNFSDIVLMAMNLLYKLHQTLkdSMDR-TNSt-----vLFEYQSQA 883 Malassez...
10_pfamImport       570 TNLLPLd----nDP-SSITRYAQKFRDmLDQPVVSNLDDVIVTTMKCLHLLSQQLkqSPYG-DQGRAa---qLSVYKHQA 640
WGS:AACS:CC1G_12190 766 MDLIPLs----gDI-AKTTRRAEEFKD-LHPSLQRNLQTYLTLTMDALAGVHQKTknASVA-DTTRQm---tLAAVRKKS 835 Coprinop...
XP_009384164        783 IPFLPL------NP-RVPDVHYDVFQK-LSPHVQACVPHLLKITLNCL---------------DNVKdtdgtLRALKSKI 839 wild Mal...
5HB3_A              696 VDLMAYTSQLRYRLP 710 Chaetomium thermophilum var. thermophilum DSM 1495
CAM44024            870 QTVLEWARQCCARTs 884 Leishmania braziliensis MHOM/BR/75/M2904
XP_004984390        849 ANLV--ANNMSRNWP 861 foxtail millet
2_pfamImport        597 TQFL--ANNMNRNWP 609
XP_003543674        838 ASFI--ANNLRRNWP 850 soybean
5_pfamImport        602 ELVVTFAGMIKFRLP 616
EDP43824            884 RALMMWAGMLRFRMS 898 Malassezia globosa CBS 7966
10_pfamImport       641 QCLIQFASTLRLRL- 654
WGS:AACS:CC1G_12190 836 RSLMVFAGILKYRMS 850 Coprinopsis cinerea okayama7#130
XP_009384164        840 ANLV--ANNMNRNWP 852 wild Malaysian banana
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