4RH7,5NUG,3VKH


Conserved Protein Domain Family
Dynein_heavy

?
pfam03028: Dynein_heavy (this model, PSSM-Id:367303 is obsolete and has been replaced by 460782)
Click on image for an interactive view with Cn3D
Dynein heavy chain and region D6 of dynein motor
This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained.
Statistics
?
PSSM-Id: 367303
Aligned: 481 rows
Threshold Bit Score: 59.0063
Created: 11-Jun-2019
Updated: 18-Jul-2019
Structure
?
Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
4RH7_A         2872 GAD---------------PSQELQELAN--AErsgECY-HQVAMGQG-QAD-LAIQMLKECARNGDWLCLKNLHLV-VSW 2930 synthetic c...
EKC41076       4735 EAEa--------------AQSRFLDFSGrrQA---PRLmVTITDNSQ-ATRsKVRKTIRKAIAEGSWVYLHNAHNA-PNV 4795 Pacific oyster
EEN60223       4554 ESDl--------------AETLFVEFAVkkQE---PRQvVYLSSGSP-QEErRVRRAITKAAEEGHWLLLHNAHNA-LHF 4614 Florida lan...
110_pfamImport    9 DAN---------------IMKSMLQYASewRQ---LKNmCILTIGQK-SNK-EIIEAYRRASLLECWIVIKNCYLW---- 64  
Q170I1          843 ENK---------------PLEEVHNLHKiyn-gksNKTlQHVNMGTE-SFE-TTVKHLKNCVKSQNWLYLNQCWQS-RQF 903  yellow feve...
EEN46873       4811 SLNsssqpniaaidikkhPVEVLKSLAK-------GIPvEHVAVGDGcES--RVDVAIDTAHNNDGWVIIEDIHLAsPQF 4881 Florida lan...
EGB03639       2493 TAA---------------AANMVIATGK--HM---DRFiAQILVVPGcRSS--GDATLAQARSRGTWVLVRNPQLC-PEF 2549 Aureococcus...
EGB05010       1411 KAS---------------AVSFVVGAAN--RM---GRNvSHILVVAS-RTG-VARRTLTQGLSSSSWVIIQNLQLC-PGF 1467 Aureococcus...
XP_027838171   3414 GSD---------------PTKDLTNLAEknDItg--pTfKVLSLGTF-NEN-VIYLALKSALYRGNWLIIQNCNFS-AQF 3473 cotton aphid
XP_015211261    533 EAEe--------------PRRLVLELCSqrSC---KTEvVFVSEDSA-SEErRIKDVIENGQSKGSWVLLENIHNS-MHL 593  spotted gar
4RH7_A         2931 ---LP-VLEKE-------LN--TlqpKd---TF----------RLWL-----TAEVHPN-FTPILLQSSLKITYE----- 2973 synthetic c...
EKC41076       4796 ---LN-SLESFlvek------------pnpeGF----------RLWV-----ACQADPEvIPVRLLQNSIKAVVD----- 4839 Pacific oyster
EEN60223       4615 ---LQ-TLDTTlqekk----------lpadsNF----------RLWV-----SAQPHPK-LPIHLLQHAIKVVVD----- 4659 Florida lan...
110_pfamImport   65 ---TE-ELDEI-------LEih--------sALpksgdkcitcRLWL-----TTCYTTE-MPKELLRRSIKVEGKtcils 119 
Q170I1          904 ---LA-NFELIhqy-lrtIDqk--------sGF----------RLWI-----VMHNRKTlFPVHVLHNCLKYRCS----- 950  yellow feve...
EEN46873       4882 lheLKlHLARVsht-atgLKdrsaq-dggrsSF----------QVWL-----TSEPSAT-IPEDLLNSLHKVAWDvigph 4943 Florida lan...
EGB03639       2550 ---SL-RLEEVclg-wasVDtn--------tKF----------RLWFvvdieNVLSTN------VLRLATKFAYE----- 2595 Aureococcus...
EGB05010       1468 ---TT-HLEEVffnnggpVSah--------vNF----------RAWCvmdvnHILTTN------LLKAATKFVYE----- 1514 Aureococcus...
XP_027838171   3474 ---LY-EIEYI-------LEqaN---EswhpNF----------RLWLifngdSLLCDS--FPISLLLRSLKVIIE----- 3522 cotton aphid
XP_015211261    594 ---MT-SIESMihlnk-----------npnkQF----------RLWI-----SAQANTS-IPVRLMHVSLRIVVD----- 637  spotted gar
4RH7_A         2974 ----------------SPPGL 2978 synthetic construct
EKC41076       4840 ----------------TPKVM 4844 Pacific oyster
EEN60223       4660 ----------------TPMMM 4664 Florida lancelet
110_pfamImport  120 fvv------vvqnqrcLPEIM 134 
Q170I1          951 ----------------SPTGI 955  yellow fever mosquito
EEN46873       4944 llggqeaqgpallahgSPQGM 4964 Florida lancelet
EGB03639       2596 ----------------PLCGV 2600 Aureococcus anophagefferens
EGB05010       1515 ----------------PPRGV 1519 Aureococcus anophagefferens
XP_027838171   3523 ----------------PSNHM 3527 cotton aphid
XP_015211261    638 ----------------TPKNM 642  spotted gar
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap