1H6F,4A04,5BQD,6F58,5T1J


Conserved Protein Domain Family
T-box

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pfam00907: T-box (this model, PSSM-Id:366363 is obsolete and has been replaced by 459990)
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T-box
The T-box encodes a 180 amino acid domain that binds to DNA. Genes encoding T-box proteins are found in a wide range of animals, but not in other kingdoms such as plants. Family members are all thought to bind to the DNA consensus sequence TCACACCT. they are found exclusively in the nucleus, and perform DNA-binding and transcriptional activation/repression roles. They are generally required for development of the specific tissues they are expressed in, and mutations in T-box genes are implicated in human conditions such as DiGeorge syndrome and X-linked cleft palate, which feature malformations.
Statistics
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PSSM-Id: 366363
Aligned: 136 rows
Threshold Bit Score: 151.969
Created: 23-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1H6F_A         7 VHLEAKELWDQFHKRGTEMVITKS-GRRMFPPFKVRCSGLDKKAKYILLMDIIAAD-DCRYKFHNSRWMVAGK-AD-PEm 82  human
4_pfamImport   1 VALQDRQLWKEFDTLCNEMIITKI-GRNLFPIIEYAFKGLQEHVEYQVGVTMQLTNcQ-KLKFTAGKWDPLDVpEEvF-- 76 
Q1T6W8         5 VALMEKSLWREFDSQCNEMIITKI-GRNLFPILEFAFKGLCEHLNYKIGVTMEPISyQ-KLKFTAGRWESLDIqEEmV-- 80  Caenorhabditis ...
EFP02532     146 VALLDKALWREFDAQCNEMIITKI-GRNLFPILEVSFKGLNEHLHYRIGVTMEPTViQ-KLKFTGGRWEKLDVmEDmV-- 221 Caenorhabditis ...
CAP33612       8 VALMEKALWKEFDDHRNEMIITKI-GRNLFPILEFAFKGLIEHQMYRIGITMEPTIfQ-KLKFTAGRWEKLDIlEDlI-- 83  Caenorhabditis ...
EFP03381       9 VSLSNQDQWEKFHPM-TEMIVTRKaGRRLFPHLNYILKGLDPNELYGVFIHFERVD-KNRYQFLRNKWNVFGK-SD-EV- 83  Caenorhabditis ...
EFP03390       9 VSLSNQDQWEKFHPM-TEMVVTRKaGRRLFPHLKYILKGLDPDAKYGLFLHFERMD-NIKYKFSVNKWKEFAK-GD-EI- 83  Caenorhabditis ...
EFO90136      14 VSLSNQEQWEKFYPH-TEMVVTRKsGRLLFPHLKYILKGLDEDTEYSVFLHFERID-NWKYKFLSRGWDKWTE-GD-KK- 88  Caenorhabditis ...
Q22289         8 IEGSQETLWKIFHAEVNEMIVTKN-GRKLFPKLEYIVEGLDENKLYAIMLQLQPVG-ESRFKFSGGKWQETGK-AE-KQ- 82  Caenorhabditis ...
EFO96515       9 LKEEQDRLWKLFHSHRNEMIVTKS-GRKMFPKLDYVIRGLNQNKLYAMMLHIEQSD-DCRYKFSSGKWMKSGK-AE-QH- 83  Caenorhabditis ...
1H6F_A        83 PK-RMYIHPDSPAT----------GEQWMSKVVTFHKLKLTNNISDK--Hg-FTILNSMHKYQPRFHIVR-----ANDIL 143 human
4_pfamImport  77 ------------QPneifmakpksGRELMQRGLKLDKLKLTNTKEAVvkNdqmIRVQSMRQYIPVLHIY--------EVV 136
Q1T6W8        81 ------------QPnevf--lmksGRELLQRGLKLEKLKLTNSKDALqkSdqmIRVQSMRQYMPVLNIY-------EISP 139 Caenorhabditis ...
EFP02532     222 ------------QSnevf--yvksGRELLQRGLKLEKLKLTNSKDALqkSdqmIRVQSMRQYVPVLNIY-------EATP 280 Caenorhabditis ...
CAP33612      84 ------------TTnevf--fvksGRELLHRGLKLEKLKLTNSKDAVqkNdqmIRVQSMRQYIPILNIY-------EDLP 142 Caenorhabditis ...
EFP03381      84 RHiKVEQHLDGWRA----------GSYWMTKPVSFEHVKITNNPDLKk-Sn-TFVLQSMHKFKPVIGVQK-----MG--- 143 Caenorhabditis ...
EFP03390      84 RPiERKLHKDGWRL----------GGHWMENPVSFEYFKITNDPEMDk-Dd-AVLVQSMHKHIPVLSIQR-----EN--- 143 Caenorhabditis ...
EFO90136      89 LPiDMKQHKDEWKC----------GRDWMKDPVSFDYIKITNNTEAKk-En-EILLQSMHRYLPVISIQK-----KG--- 148 Caenorhabditis ...
Q22289        83 VDaKKMWHADGVRK----------GSDWMWSSICFDRVKISNYSESNn-As-MIYLNSMHKYIPVLTIYEspsesPFCVP 150 Caenorhabditis ...
EFO96515      84 KEpKKLWHPDGVRS----------GKDWMANPICFDSVKITNSVDSSn-As-MIFLHSMHIYTPVLSVYEsqsetPMGIP 151 Caenorhabditis ...
1H6F_A       144 KLPYSTFRTYLFPETEFIAVTAYQNDKITQLKIDNNPFAKGFRD 187 human
4_pfamImport 137 ATGVRLVGKYEFAETKFVAVTAYQSERVKQLKVQRNKFAQGFRE 180
Q1T6W8       140 VGAHNQIGKFQFPETKFIAVTAYQSELVKQLKVQKNKFAQGFRE 183 Caenorhabditis elegans
EFP02532     281 TGATVHVGRFPFVEAKFIAVTAYQSEQVKCLKVQKNKFAQGFRE 324 Caenorhabditis remanei
CAP33612     143 NGAHMQIGKYKFTETKFIAVTAYQSEKVKNLKVQKNKFAQGFRE 186 Caenorhabditis briggsae
EFP03381     144 ---DSKIEGFRLDVTEFMAVTAYQNNDIKELKIQMNRFASGFKE 184 Caenorhabditis remanei
EFP03390     144 ---AEK-EEFRFGVTEFMAVTAYQNKNIIQLKIEMNRFASGFKE 183 Caenorhabditis remanei
EFO90136     149 ---GMEKEEFRLGITEFMAVTTYQNNSIASLKVELNQHASGFRQ 189 Caenorhabditis remanei
Q22289       151 QSSNQIVATAKFPHTEFIAVTAYQNQKITDLKIKHNSFAKGFRD 194 Caenorhabditis elegans
EFO96515     152 QPSTRLVTSVRLDYTEFIAVTAYQNDALIKLKIQFNPFAKGFRE 195 Caenorhabditis remanei
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