Conserved Protein Domain Family
CTF_NFI

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pfam00859: CTF_NFI (this model, PSSM-Id:366340 is obsolete and has been replaced by 459967)
CTF/NF-I family transcription modulation region
Statistics
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PSSM-Id: 366340
Aligned: 13 rows
Threshold Bit Score: 278.32
Created: 23-Apr-2019
Updated: 18-Jul-2019
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q4SRP6       319 EDSFIKSGVFSVAELVRVARMPITLRAAVNFSMADMSsQPYYHDL----NS----GVGLHRSLSSPPG------------ 378 spotted green p...
Q5VW26       209 EDSFVKSGVFNVSELVRVSRTPITQGTGVNFPIGEIPsQPYYHDM----NS----GVNLQRSLSSPPS------------ 268 human
XP_016846635 213 QDCFVTSGVWNVTELVRVSQTPVATASGPNFSLADLE-SPSYYNI----NQ----VALGRRSITSPPSss---------- 273 green anole
ETE70813      58 QDSFVTSGVFSVTELVRVSQTPIAAGTGPNFSLSDLE-SSSYYSM----SP-----GAMRRSLPSTSSts---------- 117 king cobra
XP_018869994 249 QESFVTSGVFSVTELIQVSRTPVVTGTGPNFSLGELQ-GHLAYDL----NPa---STGLRRTLPSTSSs----------- 309 western lowland...
XP_011612716 207 QESFVTSGVFSVTELVHVSKTRVITVVGPGFSMGELH-GHLAYDL----NPsvnqPVGLRRSLASTSSs----------- 270 torafugu
XP_002938866 208 QESFVTSGVFSVTELIQVSRTPVVSGTGPNFSLGELQ-GHLAYDL----NPt---GTGMRRTLPSTSSs----------- 268 tropical clawed...
XP_016397727 217 QESFVTSGVFSVTELVQVSRTPVVTGTGPNFSLGELQ-GHLAYDL----NPs---GVGMRRTLPSTSSs----------- 277 Sinocyclocheilu...
XP_011472092 216 QETFVTSGVFSVAELVRVSRTPVVTAVGPGFSMGELQ-GHLAYDLnqsvNQ----AVGLRRSLASTSSs----------- 279 Japanese medaka
XP_026179152 235 qESFVTSGVFSVTELVQVSRTPVVTGVGPSFSMGELQ-GHLAYDL----NQsanqPVSLRRSLASTSSs----------- 298 zig-zag eel
XP_027146252 236 QDSFVTPGVFTVAELVRVSQTPIAAGTGPNFSLADLD-SSSYYSM----SP-----GAMRRPLPSTSSss---------- 295 large yellow cr...
XP_018554091 261 QDCFVTSGVWNVAELVRVSQTPVATATGPNFSLADLD-SPGYYNI----NQ----VTLGRRSITSTPSts---------- 321 barramundi perch
XP_019717395 233 QDCFVTSGVWNVAELVRVSQTPVATASGPNFSLADLDsSPSYYNI----NQ----VAVGRRSLTSPPStrsevelyanlp 304 tiger tail seah...
Q4SRP6       379 ---SKRPKTVSMDENMDTSPTGPdFY----SSPSSP-ASSRANW-HERDG-------------------------DM-SS 423 spotted green p...
Q5VW26       269 ---SKRPKTISIDENMEPSPTGD-FY----PSPSSP-AAGSRTW-HERDQ-------------------------DM-SS 312 human
XP_016846635 274 --sTKRPK--SIDDSEMESPVDDvFYpgtgRSPAAG-SSQSSGWpNDVDA-------------------------G---- 319 green anole
ETE70813     118 --sTKRLK--SVEDEMD-SPGEEpFYtsqgRSPGSG--SQSSGW-HEVEP-------------------------GL-PS 163 king cobra
XP_018869994 310 --gSKRHKSGSMEEDVDTSPGGD-YY----TSPSSP-TSSSRNWtEDMEG-------------------------GI-SS 355 western lowland...
XP_011612716 271 --gSKRHKSGSMEDEVD-SP-GE-YY----HSP-SP-ASSSRNWtEDVEG-------------------------GL-SP 313 torafugu
XP_002938866 269 --gSKRHKSGSMEDDIDTSPGGE-YY----TSPSSP-TGSNRNWaDDVEG-------------------------GM-SP 314 tropical clawed...
XP_016397727 278 --gSKRHKSGSMEDDIDTSPGGE-YY----TSPNSP-ASSSRNWqEEMEG-------------------------GI-SP 323 Sinocyclocheilu...
XP_011472092 280 --gSKRHKSGSMEEEA-ESPGGE-YY----HSPSSP-ASSSRNWtDDMEG-------------------------GP-SP 324 Japanese medaka
XP_026179152 299 --gSKRHKSGSMEEEAD-SPGGE-YY----HSPSSP-ASSSRNWtDDMEG-------------------------GL-SP 343 zig-zag eel
XP_027146252 296 --sAKRIK--CMEEDVD-SPGEEsYYpsqgRSPGSG--SQASSW-HDVEP-------------------------GmaSP 342 large yellow cr...
XP_018554091 322 --sNKR-K--SIDDSEMESPVDDvFYs--gRSPAAGsSSQSSGWpNDVDA-------------------------GL-SS 368 barramundi perch
XP_019717395 305 rssTKR-K--SLDDSEMESPTDDvFYp--gRSPAAS-SSQSSAWpNDMDAvqhhlasvqerkikhenegvqfpyhGL-SS 377 tiger tail seah...
Q4SRP6       424 P-TMKKPDKPLFSPTSPQDSSP--------------RLSAFPQPH-HPGLtgVGHSVIStRSPP-PHSPLQFSASAILpP 486 spotted green p...
Q5VW26       313 PtTMKKPEKPLFSSASPQDSSP--------------RLSTFPQHH-HPGIpgVAHSVIStRTPP-PPSPLPFPTQAILpP 376 human
XP_016846635 320 PaSLKKSGKLDFCSALSSHTTS--------------PRMAFTHHP-LPVL-----AGVRpGSPRaTASALHFPSTSII-Q 378 green anole
ETE70813     164 PtTLKKSEKSGFSSPSPSQTSS--------------LGTAFTQHH-RPVI-----TGPR-ASPHaTPSTLHFPTSPII-Q 221 king cobra
XP_018869994 356 PvKKTEMDKSPFNSPSPQD-SP--------------RLSSFTQHH-RPVI--AVHSGIA-RSPH-PSSALHFPTTSILpQ 415 western lowland...
XP_011612716 314 PvKKTEVD-----SP-PQKDSP--------------RLGSFTQPH-RPVI--AVHSGLS-RSPH-PSPSLYFPSAP---- 364 torafugu
XP_002938866 315 TvKKSELDKSPFHSPSPQDTSP--------------RISGFTQHH-RPVI--AVHSGLA-RSPH-TSTTLHFPTSSLL-P 374 tropical clawed...
XP_016397727 324 TvKKTEMD-----SPSPQESSP--------------RLG-FTQHH-RPVI--AVHSGIS-RGPH-PSSSLHFPGAPIL-P 377 Sinocyclocheilu...
XP_011472092 325 PvKKAEMD-----SPSPQEGSP--------------RMGSYTQHH-RPVI--AVHSGLC-RSPH-PSSTLHFPSSS---- 376 Japanese medaka
XP_026179152 344 PvKKAELD-----SPSPQEDSP--------------RLGSFTQHQ-RPVI--AVHSGLS-RSPH-PSSSLHFPTSS---- 395 zig-zag eel
XP_027146252 343 AdALKKSEKSGFCGAVPSPSGasststssssssssspRTAFT-HHhRPVI-----TGPR-ASPHaPPSSLHFSSSPIL-Q 414 large yellow cr...
XP_018554091 369 PgSLKKPGKFDF-SALSSQTRS--------------PRMAFTHHP-LPML-----AGVRpGSPRaSASALHFPSPSII-Q 426 barramundi perch
XP_019717395 378 PgSLKKPGKFDF-NALSSQ-RS--------------PRMAFTHHP-LPVL-----AGVRpGSPRaSASALHFPSSSII-Q 434 tiger tail seah...
Q4SRP6       487 A-PSSYFPHTTIRYPPHLsPADPLKSYVP--SyDPSSPQSSQ-----PNSSGQvvGKVPGHF--TPVLAPSp-------h 549 spotted green p...
Q5VW26       377 A-PSSYFSHPTIRYPPHLnPQDTLKNYVP--SyDPSSPQTSQ-----PNGSGQvvGKVPGHF--TPVLAPSp-------h 439 human
XP_016846635 379 Q-SSPYFTHPTIRYHHHH-GQDSLKEFVQfvCsDGSGQGSGQ-----PNGSGQ--GKVTGSF-----LLPPp-------- 436 green anole
ETE70813     222 Q-PGPYFSHPAIRYHP----QETLKEFVQlvCpD-AGQQAGQ-----PNGSSQ--GKVHNPFlpTPMLPPPp-------p 281 king cobra
XP_018869994 416 T-ASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-DPASQQPGP-----LNGSGQ--LKMPSHClsAQMLAPPp-------- 478 western lowland...
XP_011612716 365 -----YFPHGAIRYPPHL-AQDPLKDLVSlaS-DPVDKPPSS-----LNGSNH--VKVSSHYisSQLLVPPgptpslapp 430 torafugu
XP_002938866 375 QaASTYFPHTAIRYPPHLnPQDPLKDLVSlaC-ETSSQQPGP-----LNGSGQ--VKVSSHYisTQMLAPP--------- 437 tropical clawed...
XP_016397727 378 QtASTYFPHTAIRYPPHLsSQDPLKDLVSlaC-DPSNQQPSP-----LNGSGQ--VKVSSHYisSQMLAPPl-------p 442 Sinocyclocheilu...
XP_011472092 377 -----YFPHGAIRYPPHL-AQDPLKDLVSlaC-DPANQTPTS-----LNGSTQ--VKVPAHYisSQMLAPPg-------p 435 Japanese medaka
XP_026179152 396 -----YFSHGAIRYPPHL-AQDPLKDLVSlaC-DPANQTQSS-----LNGSNQ--VKVPSHYisSQMLAPPgpapslalp 461 zig-zag eel
XP_027146252 415 Q-PGSYFSHPAIRYHP----QETLKEFVQlvCpD-SAQQAGQvgflnPNGSSQ--GKVHNPFlpTPMLPPPp-------p 479 large yellow cr...
XP_018554091 427 Q-SSPYFTHPTIRYHHHP-GQDPLKEFVQfvCaDGSGQAAGQ-----PNGSGQ--SKMPGSF-----LLPPp-------- 484 barramundi perch
XP_019717395 435 Q-SSPYFTHPTIRYHHH---QDPLKEFVQfvCtDGTGQPSAQ-----PNGGGQ--SKMPGSF-----LLPPp-------- 490 tiger tail seah...
Q4SRP6       550 HG-------AVRPVSLSMpDTKPi-TTSTEG---------YSAPG-TPTANR--FVGLSPRDPAFLHQQQ 599 spotted green pufferfish
Q5VW26       440 PS-------AVRPVTLSMtDTKPi-TTSTEGeaasptattYTASG-TSQANR--YVGLSPRDPSFLHQQQ 498 human
XP_016846635 437 PP-------VARPVPLPMpDTKSt-STNPEGgaptptspsFSAPGsSSSANR--FVGIGPRDGNFLNIPQ 496 green anole
ETE70813     282 PP-------MARPVPLPVpDTKPp-TTSTEGgatsptsptYSTPS-TSPANR--FVSVGPRDPSFVNIPQ 340 king cobra
XP_018869994 479 -P-------GLPRLALPP-ATKP--ATTSEGgatsptspsYSPPD-TSPANRs-FVGLGPRDPAGIYQAQ 535 western lowland gorilla
XP_011612716 431 PP-------SLHRPTLPA-ESKAttTTSSERgtnsptsptCSTPG-TPPSNCptFIGVTPQDAGELYQAQ 491 torafugu
XP_002938866 438 PP-------GMPRLSLSS-DTKS--TTASDGstssptsptYSAPS-TPPTNRs-FVGLGPREPGSIYQAQ 495 tropical clawed frog
XP_016397727 443 PG-------LPRLTL--PpESKSs-TTSADAaassptsptYSAPG-TPPANRs-FVGIGSRDTGSLYQAQ 500 Sinocyclocheilus rhinocerous
XP_011472092 436 APslsgpvsALLRPTLPA-ESKAs-TTSSDGgassptsptYSAPG-TPPANRspFVGVSPRDTGGLYQAQ 502 Japanese medaka
XP_026179152 462 PS-------SLSR---SA-ESKAt-TTSSDGgtnsptsptYSAPG-TPPANRssFVGVTPRDPGGLYQAQ 518 zig-zag eel
XP_027146252 480 PP-------MARPVPLPV-DAKPpsTSSAEGggnsptsptYSTPT-SSPAQR--FVSVGPRDPGF-NIPQ 537 large yellow croaker
XP_018554091 485 PP-------VARPVPLPMpDSKPn-STPPDGglsspaspsYSTPG-ATAPNR--FVGIGSRDNNFLNIPQ 543 barramundi perch
XP_019717395 491 PP-------VARPVPLPMpDSKTi-STPTDGglsspaspyavkesghgrgtpgggagrskqgifssflf- 551 tiger tail seahorse
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