2DLL,2IRF,2O6G,2O61


Conserved Protein Domain Family
IRF

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pfam00605: IRF (this model, PSSM-Id:366189 is obsolete and has been replaced by 459863)
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Interferon regulatory factor transcription factor
This family of transcription factors are important in the regulation of interferons in response to infection by virus and in the regulation of interferon-inducible genes. Three of the five conserved tryptophan residues bind to DNA.
Statistics
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PSSM-Id: 366189
Aligned: 92 rows
Threshold Bit Score: 104.157
Created: 23-Apr-2019
Updated: 18-Jul-2019
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2DLL_A          8 KLRQWLIDQIDSGKY-PGLVWEN-EEKSIFRIPWKHAGKQDYNrEEDAALFKAWALFKGKFREGIDKp--DPPTWKTRLR 83  human
Q4H3B1         28 QFKPWLIEQISSGNY-PGLEWIDsEQQRVFKLPWTKKNYPGW--EDHHKIFKAWAEHRSFI-RNQKPptqHVSLMKSNFR 103 vase tunicate
24_pfamImport   1 PLRVWLLKRLNQAKYpDVVYWTD-KERGVFRILWTKKGNPNW--KQHFQIFEDWAKHRDNFRPDSPI---NYDQLKSNFR 74 
XP_009857957   12 TLRNWLFNRLNEETYgDALKWDG-NNKGVFHILWTKKGDPNW--ENHFQIFVGWAKHKDRFDCNSPI---NYDKLKSNFR 85  vase tunicate
25_pfamImport   1 PLRNWLIKKIEQKEF-DGLLWID-EDQKIFKIPWTQKKYPNW--EKHCEIFVAWARHRGSYDESSKT---DYKKLKGNFR 73 
EDV28630        5 vMTDWLKEILEENAV-EGIHYVN-GSKDTFAIKWVHASNKSYDpDCHGAIFKRWMKKSRKL----DKyksNYSMWKTNFR 78  Trichoplax adh...
EDO30221        6 RLRDWLAIQIESGEF-TGLEWLD-KGRRVFRVPWKHGSRQSWNvEKDAAVFREWAIYTGRYDARKMKp--NPRRWKTNFR 81  starlet sea an...
EDO45495        5 PMRKWLMQKLDNAAY-PGLNWID-RRRGLFRVGWKHGSRQTYKeERDACVFRAWAEYTGRYRPGDVR---NPRRWKTNFR 79  starlet sea an...
BAE06511       10 PLRHWLVKKIEESAF-DGLEWVN-REEKTFKIPWTQKKYPNW--EKHCEIFKAWAKHRGSTNLGDPF---DFKKLKGNFR 82  vase tunicate
NP_001071953   26 RFTTWLVQQISSGNY-LGLEWVEgSNKRIFKIPWTKQNFPNW--AEHHKIFEDWALLRGRWNTVTGQpnqSFSQMKSNFR 102 vase tunicate
2DLL_A         84 CALNKSNDFEELV-ERSQLdISDPYKVYRIV 113 human
Q4H3B1        104 TILRKCRDLEEQTnLHQLGlQTGNYKVYKVL 134 vase tunicate
24_pfamImport  75 NLIKKSSDFEELE--TVNNqQTGNCKVFRVR 103
XP_009857957   86 NLIKKTTDFEEIE--NVRNqQTGNRKVYRFR 114 vase tunicate
25_pfamImport  74 CALNKSDDFEEIReRSVTNqQTGNYKIYRIL 104
EDV28630       79 CAINSLPDVMCLSaTDSQFaDDDKYKGYKIF 109 Trichoplax adhaerens
EDO30221       82 CALNALPDIEEVT-EKSCTrGNNAFKVYRMK 111 starlet sea anemone
EDO45495       80 CAMNALPDIEEVP-EKSRKqGNGARKVYMM- 108 starlet sea anemone
BAE06511       83 CALNKSDDFEEIKeRNVSDqQTGNYKIYRLL 113 vase tunicate
NP_001071953  103 TILRKCDYIKELHqSHQLGlQVGNYKVYKLL 133 vase tunicate
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