1Z3I


Conserved Protein Domain Family
DEXHc_RAD54A

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cd18067: DEXHc_RAD54A 
DEXH-box helicase domain of RAD54A
DNA repair and recombination protein RAD54A, also known as RAD54L or RAD54, plays a role in homologous recombination related repair of DNA double-strand breaks. RAD54A is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350825
Aligned: 7 rows
Threshold Bit Score: 442.294
Created: 27-Jul-2017
Updated: 17-Oct-2022
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingDEAD box
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on the structure of Saccharomyces cerevisiae Chd1 with bound gamma-thio-ATP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                       #######       
1Z3I_X     56 LRPHQREGVKFLWdcvtg----------------------------------rrienSYGCIMADEMGLGKTLQCITLIW 101 zebrafish
3123262   264 LRPHQIEGVKFLYkcvtg----------------------------------ridrcANGCIMADEMGLGKTLQCIALLW 309 fission yeast
EGG12154  241 LRPHQVEGVKFLYrcttg----------------------------------mvekgVHGCIMADEMGLGKTLQCITLLW 286 Melampsora larici-...
417577    271 LRPHQVEGVRFLYrcvtglvmkdyleaeafntssedplksdekaltesqkteqnnrgAYGCIMADEMGLGKTLQCIALMW 350 baker's yeast
O12944    142 LRPHQREGVKFLWdcvts----------------------------------rripgSHGCIMADEMGLGKTLQCITLMW 187 chicken
O76460    156 LRPHQREGVRFMYecveg-----------------------------------krgnFNGCIMADEMGLGKTLQCVTLVW 200 fruit fly
Q92698    153 LRPHQREGVKFLWecvts----------------------------------rripgSHGCIMADEMGLGKTLQCITLMW 198 human
Feature 1                                    #                                                
1Z3I_X    102 TLLkqspdc-kpeidkVIVVSPSSLVRNWYNEVGKWLGgr-vQPVAIDGGskdeidsklvn------fisqqgmriptPI 173 zebrafish
3123262   310 TLLkqspqagkptiekAIITCPSSLVKNWANELVKWLGkdaiTPFILDGKsskqelimalqq-----wasvhgrqvtrPV 384 fission yeast
EGG12154  287 TLLkqspipgkpainkAIVACPSSLVKNWANELDKWLGagalVPLAVDGKqskadllksvrq-----wvladgrrvsqPV 361 Melampsora larici-...
417577    351 TLLrqgpqg-krlidkCIIVCPSSLVNNWANELIKWLGpntlTPLAVDGKkssmgggnttvsqaihawaqaqgrnivkPV 429 baker's yeast
O12944    188 TLLrqspdc-kpeiekAMVVSPSSLVRNWYNEVEKWLGgr-iQPLAIDGGskeeidrklvg------smnqrglrvpsPI 259 chicken
O76460    201 TLLrqgpec-kptinkAIVVSPSSLVKNWEKEFTKWLHgr-lLCLPMEGGtkentiraleq-------fsmtsarlgtPV 271 fruit fly
Q92698    199 TLLrqspec-kpeidkAVVVSPSSLVKNWYNEVGKWLGgr-iQPLAIDGGskdeidqkleg------fmnqrgarvssPI 270 human
Feature 1                               ##                                                    
1Z3I_X    174 LIISYETFRLhaevl-hkgkVGLVICDEGHRLKNsdNQTYLALNSMNaQRRVLISGTPIQNDLlEYFSLVHFVNSgiLGT 252 zebrafish
3123262   385 LIASYETLRSyvehl-nnaeIGMLLCDEGHRLKNsdSLTFTALDKLNvQRRVILSGTPIQNDLsEYFSLLNFANPglLGS 463 fission yeast
EGG12154  362 MIVSYETLRGslveelgtapIGLLLCDEGHRLKNaeNQTYAALNSIKcEKRVILTGTPIQNDLsEYFALLNFANPnyLGD 441 Melampsora larici-...
417577    430 LIISYETLRRnvdql-kncnVGLMLADEGHRLKNgdSLTFTALDSIScPRRVILSGTPIQNDLsEYFALLSFSNPglLGS 508 baker's yeast
O12944    260 LIISYETFRLhaeal-qkgsVGLVICDEGHRLKNseNQTYQALNSLNtPRRVLISGTPIQNDLlEYFSLVHFVNSgiLGT 338 chicken
O76460    272 LLISYETFRIyaeil-ckyeVGMVICDEGHRLKNsdNLTYQALMGLKtKRRVLLSGTPIQNDLtEYYSLVNFVNPemLGT 350 fruit fly
Q92698    271 LIISYETFRLhvgvl-qkgsVGLVICDEGHRLKNseNQTYQALDSLNtSRRVLISGTPIQNDLlEYFSLVHFVNSgiLGT 349 human
Feature 1                                                   
1Z3I_X    253 AQEFKKRfeipilkgrdadasdkdraageqklqeLISIVNRCLIRR 298 zebrafish
3123262   464 RQEFRKNyeipilkgrdadgtekdkengdaklaeLAKIVNRFIIRR 509 fission yeast
EGG12154  442 RAQFRKNyelpilrgrdsdssqsevtlaetklkeLTTKVQKFIIRR 487 Melampsora larici-populina 98AG31
417577    509 RAEFRKNfenpilrgrdadatdkeitkgeaqlqkLSTIVSKFIIRR 554 baker's yeast
O12944    339 AQEFKRHfelpilkgrdadaseaerqkgeerlkeLISIVNRCLIRR 384 chicken
O76460    351 AAVFKRNfesailrgqntdsteqerqraiektqeLIGLVDQCIIRR 396 fruit fly
Q92698    350 AHEFKKHfelpilkgrdaaaseadrqlgeerlreLTSIVNRCLIRR 395 human

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