Conserved Protein Domain Family
DEADc_DDX56

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cd17961: DEADc_DDX56 
DEAD-box helicase domain of DEAD box protein 56
DDX56 is a helicase required for assembly of infectious West Nile virus particles. New research suggests that DDX56 relocalizes to the site of virus assembly during WNV infection and that its interaction with WNV capsid in the cytoplasm may occur transiently during virion morphogenesis. DDX56 is a member of the DEAD-box helicases, a diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP-binding region.
Statistics
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PSSM-Id: 350719
Aligned: 26 rows
Threshold Bit Score: 245.571
Created: 30-Jan-2014
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
ATP bindingDEAD box
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Comment:based on structures of other members of the DEAD-box helicase family with bound ADP/AMP

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ## ###  #                  ########                                 
EGF81125    3 LDPRIQRAVAklGFVQPTlVQAKAIPLALE-GKDILARARTGSGKTAAYCIPIIQKILtfktnna-----sappaiRALI 76  Batrachochytrium d...
EGG10017   28 LNPLILSSLAslSLSHPTqVQRDFIPLALS-GKDILAGSRTGSGKTLAYAIPIIQNILdlrakkrlnpieiinfnlNAII 106 Melampsora larici-...
Q6ATJ8     99 LDEQLKRALRkkGLDKATpIQREAIPLILE-GKDVVAKAKTGSGKTFAYLLPMLHELLklsaegr-----irksapNVFI 172 Japanese rice
EGD83515   20 LDPRTAKASQrmGWSRPTaIQRAVITCALE-GRDILARARTGSGKTGAYALPLINAVLkakeerattasggedhgiLALV 98  Salpingoeca sp. AT...
Q9SW44     53 LDSRLIRALTkkGIEKPTlIQQSAIPYILE-GKDVVARAKTGSGKTLAYLLPLLQKLFsadsvs------kkklapSAFI 125 thale cress
CCA25813   21 LDQRLIKATQklNYTHATlVQVHCIPLALQ-GKDLIVRARTGSGKTAAFALPLLHKILmhkeseas--stgsrsvtQAII 97  Albugo laibachii Nc14
Q4P7M1     66 LDPRLLRALAdlGYGIPTpIQQKAIPLALA-GKDILARARTGSGKTLAYGLPLLQKVLdaksavak--sdanhqltRALV 142 Ustilago maydis 521
CBJ30201   54 LDRRLVKAVAkmGFVYPTlVQNKCIPLALR-GKDLLVRARTGSGKTAAFALPLLQKILrrkeaep-----glprgvRAVV 127 Ectocarpus silicul...
Q6BLM5     28 LDARLLQAIDqlGFENPTlIQSSAIPLAIEeKRDIIAKASTGSGKTAAYSIPIIQNLLqdest---------ereiKSII 98  Debaryomyces hanse...
Q54VF1     30 LDNRILRALKkmGFQNPSlVQSKSIPLSLQ-GKDILAKARTGSGKTAAYSIPIIQKVLmakeks-------nikgvKAVV 101 Dictyostelium disc...
Feature 1                                                                                     
EGF81125   77 LVPTRELAEQVHRHIQQLtmya--tkeVRSVNISTGdvsva-----gqrsiLAETPDIIVATPAKIMAHIREnn---leL 146 Batrachochytrium d...
EGG10017  107 LVPTRELSEQVSVTFRSLcngmgseaiIEVLNLSAPdasgs------kkrnSGSSPDVLVSTPAKLLSKLRSgs----lN 176 Melampsora larici-...
Q6ATJ8    173 LVPTRELCQQVHNEASSLlefc--tskLKVVQVNASmsdkd------ikvaLSGPPNILVTTPACVASCISKgiirgssI 244 Japanese rice
EGD83515   99 LVPTKELVDQTADTLKQIaahc--eqqVSVVSVVASasssrsrkkmddaslLTDLPDIVVATPTTVLSKILEkr---vvV 173 Salpingoeca sp. AT...
Q9SW44    126 LVPSRELCQQVYTEVSSLielc--rvqLKAVQLTSSmsasd------mrnaLAGLPEILVSTPACIPKCFAAgvleptaV 197 thale cress
CCA25813   98 LVPTRELVDQVREQLWNLmhyc--rnrISLLALTGQsmsi-------qqalLRDAPDILISTPGRIVSHLEAgy----fD 164 Albugo laibachii Nc14
Q4P7M1    143 LVPTRELAEQVFRHLSVVieyv--rddIRLVNVAREasekv------qrllLSEKPDVVIATPSKALNYLQNas---ldL 211 Ustilago maydis 521
CBJ30201  128 LVPTRELCDQARAHLSELmhyc--rdqVSLLALVDDnmaa-------qeaaLRDKADVLVATPARLVAHLKAgn---veL 195 Ectocarpus silicul...
Q6BLM5     99 LVPTRELSNQVSQFLEKLlifc--nskIRLINISSNlsdqv------inslLINKPEIIVSTPAKLIQILEKnvnsnliN 170 Debaryomyces hanse...
Q54VF1    102 LVPTRELCEQVKNHFNQVsyyc--qqlVSVVQLGNDktlde------qkglLRDIPDVIVSTPTRLVQHLENkt---iqL 170 Dictyostelium disc...
Feature 1                                                                                 
EGF81125  147 KETVESMVIDEADLILSYGHDEDVKKLLLHLPr-----------ILQSYLMSATLSTDVEELRQLVLR-NPVILKL 210 Batrachochytrium dendr...
EGG10017  177 LSNLSFLVLDEADLILSYGHSSDDIKSILSGSgnadgitwrfpnFYQSFLMSATMTEEVAQLKNLVLR-DPEILMV 251 Melampsora larici-popu...
Q6ATJ8    245 KESLSMMILDEADLLLSYRCEDDIKALVPHIPr-----------SCQSILMSATSSADIEKLTKLLLH-NPFILTL 308 Japanese rice
EGD83515  174 TDDFKMLVLDEADLILTYGHDDAVRQLSTVLPs-----------VKQTILLSATMSEDIQALKSHIVLrSPAIIKL 238 Salpingoeca sp. ATCC50818
Q9SW44    198 SESLSILVLDEADLLLSYGYEDNLRSVTSIIPr-----------RCQCLLMSATTSSDVEKLKKLILH-NPIVLTL 261 thale cress
CCA25813  165 PANIHSLIIDEADLILSFGSKSDLCSIFDHLPk-----------AIQILCMSATLSPDLRALKKSVFH-NAAILKL 228 Albugo laibachii Nc14
Q4P7M1    212 KSGMESLAIDEADLILSYGHDADVKSLLGANFlp---------sHFQSFLMSATMTSDVSKLKGLLLR-NPVVLKL 277 Ustilago maydis 521
CBJ30201  196 KDTVETLVVDEADLVLSFGYSEDIRAVTKRLPk-----------ICQGFLMSATLSAELEDLKRVVLH-SPAVLKL 259 Ectocarpus siliculosus
Q6BLM5    171 LSTVKNLTIDEVDLVLSYGYLEDLQKLESYLPik---------kNLQTFLMSATINDDLNDIKSKFCS-RPAILKL 236 Debaryomyces hansenii ...
Q54VF1    171 QSTLDILVIDEADLVLNYGHQNDINIIKSFLPk-----------VCQCFLMSATLTKEVEELKKLVLH-TPAVLKL 234 Dictyostelium discoideum

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