1IG6


Conserved Protein Domain Family
ARID_ARID5B

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cd16885: ARID_ARID5B 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of AT-rich interactive domain-containing protein 5B (ARID5B) and similar proteins
ARID5B, also called MRF1-like protein or modulator recognition factor 2 (MRF-2), is a DNA-binding protein that directly interacts with plant homeodomain (PHD) finger 2 (PHF2) to form a protein kinase A (PKA)-dependent PHF2-ARID5B histone H3K9Me2 demethylase complex, which is a signal-sensing modulator of histone methylation and gene transcription. It also functions as a transcriptional co-regulator for the transcription factor sex determining region Y (SRY)-box protein 9 (Sox9) and promotes chondrogenesis through histone modification. Moreover, ARID5B is highly expressed in the cardiovascular system and may play essential roles in the phenotypic change of smooth muscle cells (SMCs) through its regulation of SMC differentiation. Its polymorphism has been associated with risk for pediatric acute lymphoblastic leukemia (ALL). ARID5B contains an AT-rich DNA-interacting domain (ARID, also known as BRIGHT), which can bind both the major and minor grooves of its target sequences.
Statistics
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PSSM-Id: 350649
Aligned: 7 rows
Threshold Bit Score: 186.433
Created: 12-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              #######                        # ##  #          # ### #    
1IG6_A          3 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEtITARRQWKHIYDELGGNPGSTSAATCTRRHYE 82   human
Q5ZJ69        323 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEtITARRQWKHIYDELGGNPGSTSAATCTRRHYE 402  chicken
E7F888        214 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEvITARRQWKNVYDELGGNPGSTSAATCTRRHYE 293  zebrafish
Q14865        320 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEtITARRQWKHIYDELGGNPGSTSAATCTRRHYE 399  human
CDI12409       83 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEtITARRQWKHIYDELGGNPGSTSAATCTRRHYE 162  African clawe...
XP_007895381  329 EEQAFLVELYKYMKERStPIERIPYLGFKQINLWTMFQAAQKLGGYEaITARRQWKHIYDELGGNPGSTSAATCTRRHYE 408  elephant shark
XP_005997773  326 DEQAFLVALYKYMKERKtPIERIPYLGFKQINLWTMFQAAQKLGGYEvITARRQWKHIYDELGGNPGSTSAATCTRRHYE 405  coelacanth
Feature 1                        
1IG6_A         83 RLILPYERFIKGEED 97   human
Q5ZJ69        403 RLILPYERFIKGEED 417  chicken
E7F888        294 RLILPYERFTKGEED 308  zebrafish
Q14865        400 RLILPYERFIKGEED 414  human
CDI12409      163 RLILPYERFIGGEED 177  African clawed frog
XP_007895381  409 RLILPYERYIKGEED 423  elephant shark
XP_005997773  406 RLILPYERFIKGEED 420  coelacanth

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