2JXJ,5CEH


Conserved Protein Domain Family
ARID_KDM5A

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cd16873: ARID_KDM5A 
Click on image for an interactive view with Cn3D
ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
KDM5A, also called histone demethylase JARID1A, Jumonji/ARID domain-containing protein 1A, or Retinoblastoma-binding protein 2 (RBBP-2 or RBP2), was originally identified as a retinoblastoma protein (Rb)-binding partner; its inactivation may be important for Rb to promote differentiation. It is involved in transcription through interacting with TBP, p107, nuclear receptors, Myc, Sin3/HDAC, Mad1, RBP-J, CLOCK and BMAL1. KDM5A functions as the trimethylated histone H3 lysine 4 (H3K4me3) demethylase that belongs to the JARID subfamily within the JmjC proteins. It also displays DNA-binding activities that can recognize the specific DNA sequence CCGCCC. KDM5A contains the catalytic JmjC domain, a JmjN domain, an AT-rich DNA-interacting domain (ARID, also known as BRIGHT), a C5HC2 zinc finger, as well as three plant homeodomain (PHD) fingers.
Statistics
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PSSM-Id: 350637
Aligned: 7 rows
Threshold Bit Score: 178.919
Created: 11-Sep-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative DNA
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:putative DNA binding site [nucleic acid binding site]
Evidence:
  • Comment:Based on the structure evidence that Drosophila melanogaster Dead Ringer (1KQQ) binds DNA through its ARID domain.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                               #######                        # ##  #         # ### #    
2JXJ_A          5 SRVRLDFLDQLAKFWELQGStLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYlPGKGTGSLLKSHYE 84   human
5CEH_A         74 TRVRLDFLDQLAKFWELQGStLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYlPGKGTGSLLKSHYE 153  human
P29375         84 TRVRLDFLDQLAKFWELQGStLKIPVVERKILDLYALSKIVASKGGFEMVTKEKKWSKVGSRLGYlPGKGTGSLLKSHYE 163  human
XP_416379      84 TRVKLDFLDQLAKFWELQGSnLKIPVVERKILDLYGLSKIVAGKGGFEVVTKEKKWSKVASRLGYlPGKGTGSLLKSHYE 163  Gallus gallus
XP_018096642   78 TRVKLDFLDQLGKFWELQGSaLRIPVVDRKLLDVYALSKIVSSEGGFEVVTKEKKWSQVGNRMGYqPGKGTGSLLKVHYD 157  Xenopus laevis
Q4STB9         78 TRVKLNFLDQIAKFWELQGSkIRFPHVERKVLDLYRLSKIVSSEGGFEAVCKEKRWSKVSSRMGYpSGRGTGSLLRSHYE 157  spotted green...
XP_007896827  277 TRVKLNFLDHMAKFWELQGStLKIPHVERRILDLYTLSKVVASEGGFEMLCKERKWSKVASRMGYpQGKGIGSLLRSHYE 356  elephant shark
Feature 1                     
2JXJ_A         85 RILYPYELFQSG 96   human
5CEH_A        154 RILYPYELFQSG 165  human
P29375        164 RILYPYELFQSG 175  human
XP_416379     164 RILYPYELFQSG 175  Gallus gallus
XP_018096642  158 RILYPYELFQSG 169  Xenopus laevis
Q4STB9        158 RILYPYELFQSG 169  spotted green pufferfish
XP_007896827  357 KILYPYELFQTG 368  elephant shark

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