Conserved Protein Domain Family
ArfGap_AGAP

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cd08836: ArfGap_AGAP 
ArfGAP with GTPase domain, ANK repeat and PH domains
The AGAP subfamily of ADP-ribosylation factor GTPase-activating proteins (Arf GAPs) includes three members: AGAP1-3. In addition to the Arf GAP domain, AGAP proteins contain GTP-binding protein-like, ANK repeat and pleckstrin homology (PH) domains. AGAP1 and AGAP2 have phosphatidylinositol 4,5-bisphosphate (PI(4,5)P2)-mediated GTPase-activating protein (GAP) activity preferentially toward Arf1, and function in the endocytic system. AGAP1 and AGAP2 independently regulate AP-3 endosomes and AP-1/Rab4 fast recycling endosomes, respectively. AGAP1, via its PH domain, directly interacts with the adapter protein 3 (AP-3), which is a coat protein involved in trafficking in the endosomal-lysosomal system, and regulates AP-3-dependent trafficking. In other hand, AGAP2 specifically binds the clathrin adaptor protein AP-1 and regulates the AP-1/Rab-4 dependent endosomal trafficking. AGAP2 is overexpressed in different human cancers including prostate carcinoma and glioblastoma, and promotes cancer cell invasion. AGAP3 exists as a component of the NMDA receptor complex that regulates Arf6 and Ras/ERK signaling pathways. Moreover, AGAP3 regulates AMPA receptor trafficking through the ArfGAP domain. Together, AGAP3 is believed to involve in linking NMDA receptor activation to AMPA receptor trafficking.
Statistics
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PSSM-Id: 350065
Aligned: 30 rows
Threshold Bit Score: 202.906
Created: 20-Jan-2010
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding sitearginine finger
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Comment:The coordination of the Zn2+ ion by 4 cysteines would indicate that this ion plays a structure stabilization role rather than catalytical role.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                        #  #                #  #                                         
Q9NGC3        702 AAMLAIRQRvpGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSHISKVRSLGLDDWPSPHLSVMLAIGNSLANSV 781  fruit fly
EFV62086      647 DVVQALKKVp-GNDHCADCNAPNPDWASLNLGTLICIQCSGIHRNLGTHISKVRSLDLDEWAVEHIRVMQALGNDLVNRI 725  Trichinella s...
ADY40697      725 ADVQALRQVa-GNDACADCGAAKPDWASLNLGTLICIECSGIHRNLGSHVSKVRSLELDEWPVEYLTVMEMIGNTRANSV 803  pig roundworm
EFX86787      624 ASIQSLRSTviGNANCADCDAPNPDWASLNLGVLVCIECSGIHRNLGSHISRVRSLDLDEWPPGHIAVMLGLGNTLSNSI 703  common water ...
EEZ97569      302 ATIQSIRSRvpGNGFCVDCDATNPDWASLNLGVLMCIECSGIHRNLGSHISRVRSLDLDEWPAGHLSVMLAIGNTLANSV 381  red flour beetle
EFN68928      477 FKMHCIKNKvsGNDACVDCGAPNPDWASLNLGVLMCIECSGIHRNLGSHISKVRSLDLDDWSAGHLSVMLALGNDIANSI 556  Camponotus fl...
XP_003145746  409 TEVQALRLIp-GNDSCADCDTPKPDWASLNLGTLICIECSGIHRNLGSHISKVRSLDLDDWPMEYLNVMEAIGNKKANAV 487  Loa loa
NP_001022838  619 PDIAALRSIp-GNGRCADCGNPSSEWASINLGIIICIECSGIHRNLGSHISKVRGLELDQWPVEHLAVMQAIGNDKANEM 697  nematode
XP_002109653   59 AIVRTLRKVn-GNFKCVDCRSENPDWASLNLGTLMCIECSGLHRNLGAHISRVRSLTLDSWPAINLSVMSAIGNHTANKV 137  Trichoplax ad...
XP_002431347  611 AVLIAVKNKvpGNAYCVDCDAPKPCWASINLGVLMCIECSGIHRNLGSHISRVRSLDLDEWPPGPLSLMLAIGNAMANSI 690  human body louse
Feature 1                                       
Q9NGC3        782 WESntrqrvk-ptsqasREDKERWVRSKYE 810  fruit fly
EFV62086      726 WEYdtgnkvk-plpnstREVKEQWIRAKYE 754  Trichinella spiralis
ADY40697      804 WEFsapvekk-prpdstRDEKESWIKQKYE 832  pig roundworm
EFX86787      704 WEArmrgvk--pgpqssRDDKERWIRAKYE 731  common water flea
EEZ97569      382 WECrtqgrtk-ptptssREEKERWIRAKYE 410  red flour beetle
EFN68928      557 WEYclngkqk-pvsdssREEKEQWIRWKYE 585  Camponotus floridanus
XP_003145746  488 WEYnapagrk-pqatasREEKEKWIKVKYE 516  Loa loa
NP_001022838  698 WEFgllngerkptpessREEKERFIDRKYV 727  nematode
XP_002109653  138 WEAnfhnhtk-idskssREDKEKFIRAKYE 166  Trichoplax adhaerens
XP_002431347  691 WERntggqtk-pnfsssREEKERWIRAKYE 719  human body louse

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