4D01,4UY2


Conserved Protein Domain Family
LGIC_ECD_nAChR_A9

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cd19022: LGIC_ECD_nAChR_A9 
extracellular domain of neuronal acetylcholine receptor subunit alpha 9 (CHRNA9)
This subfamily contains the extracellular domain of nicotinic acetylcholine receptor subunit alpha 9 (alpha9), encoded by the CHRNA9 gene. This protein is involved in cochlea hair cell development and is also expressed in the outer hair cells (OHCs) of the adult cochlea as well as in keratinocytes, the pituitary gland, B-cells, and T-cells. Mammalian alpha9 subunits can form functional homomeric alpha9 receptors as well as the heteromeric alpha9alpha10 receptors, the latter being atypical since the heteromeric alpha9alpha10 receptor is composed only of alpha subunits compared to nAChRs typically assembled from alpha and beta subunits. A stoichiometry of (alpha9)2(alpha10)3 has been determined for the rat recombinant receptor. The alpha9alpha10 nAChR is an important therapeutic target for pain; selective block of alpha9alpha10 nicotinic acetylcholine receptors by the conotoxin RgIA has been shown to be analgesic in an animal model of nerve injury pain, and accelerates recovery of nerve function after injury, possibly through immune/inflammatory-mediated mechanisms. CHRNA9 polymorphisms are associated with non-small cell lung cancer, and effect of a particular SNP (rs73229797) and passive smoking exposure on risk of breast malignancy has been observed.
Statistics
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PSSM-Id: 349823
Aligned: 5 rows
Threshold Bit Score: 442.946
Created: 22-Sep-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:oligomer interface [polypeptide binding site]
Evidence:
  • Comment:this structure superimposes very well with the structure of the corresponding domains of homologous proteins in pentameric states, denoting native folding
  • Structure:4UY2: Homo sapiens neuronal acetylcholine receptor subunit alpha-9 dimer interface; contacts at 4.0A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                           # #     ##      #                     # #    
4D01_A         6 AQKLFNDLFEDYSnaLRPVEDTDkVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRdqYDGLDSIRIPSD 85  human
4UY2_A         6 AQKLFNDLFEDYSnaLRPVEDTDkVLNVTLQITLSQIKDMDERNQILTAYLWIRQIWHDAYLTWDRdqYDGLDSIRIPSD 85  human
Q8JFN7        25 AQKLLNDLMENYSsaLRPVEDTDkTLNVTLQITLSQIKDMDERNQVLTTYLWIRQTWFDAYLKWDKeeYDGLEVIRIPSN 104 rainbow trout
NP_990091     33 AQMLFNELFEDYSnaLRPVEDTDkVLNVTLQITLSQIKDMDERNQILTAYLWIRQSWYDAYLKWDKdkYDGLDSIRIPSN 112 chicken
XP_002933514  32 AQMLFRDLFEDYSnaLRPVEDTDkALNVSLQITLSQIKDVDERNQILTAYLWIRLSWYDAYLKWDRdeYDGLDSIRIPSN 111 western clawed ...
Feature 1            ## # ##   # ##   ### #         # # #   #                     #              
4D01_A        86 lVWRPDIVLYNkaDDESSEpvNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALD 165 human
4UY2_A        86 lVWRPDIVLYNkaDDESSEpvNTNVVLRYDGLITWDAPAITKSSCVVDVTYFPFDNQQCNLTFGSWTYNGNQVDIFNALD 165 human
Q8JFN7       105 lVWRPDIVLYNkaDEEASGpaDTNVVLRYNGEITWDMPAITKSSCVVDVSYFPFDWQWCNLTFGSWTYNGNQVDIAMGMD 184 rainbow trout
NP_990091    113 lVWRPDIVLYNkaDDDFSEpvNTNVVLRYDGKITWDAPAITKSSCVVDVSYFPFDSQQCNLTFGSWTYNGNQVDIINSLD 192 chicken
XP_002933514 112 mVWRPDIVLYNkaDDEFSEpvNTNVVLRYDGKITWDSPAITKSSCVVDVSYFPFDNQQCNLTFGSWTYNGNQVDIINTMD 191 western clawed ...
Feature 1                                                     # 
4D01_A       166 SGDLSDFIEDVEWEVHGMPAVKNVISYGCCsEPYPDVTFTLLLKRRS 212 human
4UY2_A       166 SGDLSDFIEDVEWEVHGMPAVKNVISYGCCsEPYPDVTFTLLLKRRS 212 human
Q8JFN7       185 SGDLSDFVENVEWECHGMPAVRNVIMYGCCsDPYPDITYTLHLKRRS 231 rainbow trout
NP_990091    193 SGDLSDFVEDVEWEIHGMPAVKNVITYGCCsEPYPDVTFTLILKRKS 239 chicken
XP_002933514 192 SGDLSDFVENVEWEMQGMPAVKNVITYGCCsEPYPDITFTLILKRRS 238 western clawed frog

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