Conserved Protein Domain Family
LGIC_ECD_GABAAR_theta

?
cd19003: LGIC_ECD_GABAAR_theta 
extracellular domain of gamma-aminobutyric acid receptor subunit theta (GABRQ)
This family contains extracellular domain (ECD) of the theta subunit of type-A gamma-aminobutyric acid receptor (GABAAR), and encoded by the GABRQ gene, which is mapped to chromosome Xq28 in a cluster of genes that also that encode the alpha 3 and epsilon subunits. The transmembrane region consists of four transmembrane-spanning alpha-helical segments (M1-M4) that are linked by loops. The intracellular loop that links M1 and M2 determines the ion selectivity of the channel. GABAAR is an anionic channel, mediating fast inhibitory synaptic transmission. Cl- ions are selectively conducted through the GABAAR pore, resulting in hyperpolarization of the neuron. GABAAR is the principal mediator of rapid inhibitory synaptic transmission in the human brain. A decline in GABAAR signaling triggers hyperactive neurological disorders such as insomnia, anxiety, and epilepsy. GABA stimulates human hepatocellular carcinoma growth through overexpressed GABAAR theta subunit. Also, two autism spectrum disorder (ASD)-associated protein truncation variants have been identified in alpha 3 (GABRA3) and theta (GABRQ) genes.
Statistics
?
PSSM-Id: 349804
Aligned: 8 rows
Threshold Bit Score: 390.503
Created: 8-Feb-2018
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
Feature 1:pentamer interface [polypeptide binding site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                   # ##    ##      # ##                # ##        ######  # # ##     ##
XP_549345     82 PVPVGVSMYVsSIEQISEmTMDYTItMFFHQTWKDPRLAYhETDLNLTLDYRMLEKLWVPDCYFLNSKDAFVHDVTvENR 161
NP_061028     82 PVPVRISIYVtSIEQISEmNMDYTItMFFHQTWKDSRLAYyETTLNLTLDYRMHEKLWVPDCYFLNSKDAFVHDVTvENR 161
XP_001136669  82 PVPVRISIYVtSIEQISEmNMDYTItMFFHQTWKDSRLAYyETTLNLTLDYRMHEKLWVPDCYFLNSKDAFVHDVTvENR 161
XP_001093973  82 PVPVRISIYVtSIEQISEmNMDYTItMFFHQTWKDSRLAYyETTLNLTLDYRMHEKLWVPDCYFLNSKDAFVHDVTvENR 161
Q9UN88        82 PVPVRISIYVtSIEQISEmNMDYTItMFFHQTWKDSRLAYyETTLNLTLDYRMHEKLWVPDCYFLNSKDAFVHDVTvENR 161 human
NP_001179568  82 PVPVGVSIYVsSIEQISEvTMDYTItMFFHQTWKDPRLAYhETNLNLTLDYRLFEKLWVPDCYFLNSKEAFVHDATvENR 161
NP_065234     82 PVPVSVSIYVsSIEQISEiNMDYTItMFLHQTWKDTRLAYyETNLNLTLDYRMHEKLWVPDCYFVNSKDAFVHDVTvENR 161
NP_113921     77 PVPVSISIYVsSIEQISEiNMDYTItMFLHQTWKDTRLAYyETNLNLTLDYRMHEKLWVPDCYFVNSKDAFVHDVTaENR 156
Feature 1        # #         ###                           #                                     
XP_549345    162 VFQLHPDGTVRYGMRLTTTAACSLDLQKFPLDKQTCKLEVESYGYTVeDIVLYWEGNgNAIQGTEkLHIPQFSFLGKTMS 241
NP_061028    162 VFQLHPDGTVRYGIRLTTTAACSLDLHKFPMDKQACNLVVESYGYTVeDIILFWDDNgNAIHMTEeLHIPQFTFLGRTIT 241
XP_001136669 162 VFQLHPDGTVRYGIRLTTTAACSLDLHKFPMDKQACNLVVESYGYTVeDIILFWDDNgNAIHMTEeLHIPQFTFLGRTIT 241
XP_001093973 162 VFQLHPDGTVRYGIRLTTTAACSLDLHKFPMDKQACNLVVESYGYTVeDIILFWDDNgNAIHMTEeLHIPQFTFLGRTIT 241
Q9UN88       162 VFQLHPDGTVRYGIRLTTTAACSLDLHKFPMDKQACNLVVESYGYTVeDIILFWDDNgNAIHMTEeLHIPQFTFLGRTIT 241 human
NP_001179568 162 VFQLHPDGTVRYGIRLTTTAACSMNLEKFPLDKQTCKLEVESYGYTVdDILLYWEGSgNAVQGTEkLHIPQFSFLGKTIS 241
NP_065234    162 VFQLHPDGTVRYGIRLTTTAACSLDLQKFPMDKQSCKLEVESYGYTVeDIVLSWEDD-NAIHITDgLHIPQYTYLGRTIT 240
NP_113921    157 VFQLHPDGTVQYGIRLTTTAACSLDLQKFPMDKQSCKLEVESYGYTVeDIVLSWEDD-NAIHITDeLHIPQYTYLGRTIT 235
Feature 1                              #
XP_549345    242 SKEVFFYTGSYVRLILRFLVQRE 264
NP_061028    242 SKEVYFYTGSYIRLILKFQVQRE 264
XP_001136669 242 SKEVYFYTGSYIRLILKFQVQRE 264
XP_001093973 242 SKEVYFYTGSYIRLILKFQVQRE 264
Q9UN88       242 SKEVYFYTGSYIRLILKFQVQRE 264 human
NP_001179568 242 TKEVFFYTGSYVRLILRFLVKRE 264
NP_065234    241 SKEVYFYTGSYMRLIVKFQVQRE 263
NP_113921    236 SKEVYFYTGSYMRLIVKFQVQRE 258

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap