Conserved Protein Domain Family
BTB_POZ_KCNA6

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cd18407: BTB_POZ_KCNA6 
BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily A member 6 (KCNA6)
KCNA6, also called voltage-gated potassium channel HBK2 or voltage-gated potassium channel subunit Kv1.6, mediates transmembrane potassium transport in excitable membranes. Assuming opened or closed conformations in response to the voltage difference across the membrane, the protein forms a tetrameric potassium-selective channel through which potassium ions may pass in accordance with their electrochemical gradient. KCNA6 is distributed primarily in neurons of central and peripheral nervous systems. Voltage-gated potassium (Kv) channels are composed of alpha subunits, which form the actual conductance pore, and cytoplasmic beta subunits, which are auxiliary proteins that associate with alpha subunits to modulate the activity of the Kv channel. KCNA6 is an alpha subunit that forms functional homo- or hetero-tetrameric channels (with other Kv1/KCNA alpha subunits) through its BTB/POZ domain, also known as tetramerization (T1) domain, which is a versatile protein-protein interaction motif.
Statistics
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PSSM-Id: 349714
Aligned: 3 rows
Threshold Bit Score: 251.455
Created: 15-Sep-2017
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Feature 1:putative tetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on the tetramer structure of Rattus norvegicus voltage-gated potassium channel Kv1.2 BTB domain

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #   # ########  #                   #  #   # ## ##  #   #  #   # #   #   ##  # 
P17658        41 ERLVINISGLRFETQLRTLSLFPDTLLGDPGRRVRFFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFLEE 120 human
XP_018774060   4 ERLVINISGLRFETQLRTLSIFPDTLLGDPSRRVRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVHVPLDIFLEE 83  common canary
XP_003643199 135 ERLVINISGLRFETQLRTLSIFPDTLLGDPSRRVHYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVHVPLDIFLEE 214 chicken
Feature 1                                                          
P17658       121 IRFYQLGDEALAAFREDEGCLPEggedekpLPSQPFQRQVWLLFEYPESS 170 human
XP_018774060  84 IRFYQLGQEAIETFREDEGFIPEee---kpLPQHHFQRQVWLLFEYPESS 130 common canary
XP_003643199 215 IRFYQLGQEAIETFREDEGFIQEee---kpLPEHHFQRQVWLLFEYPESS 261 chicken

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