2MJ8,2DNT


Conserved Protein Domain Family
CD_CDY

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cd18634: CD_CDY 
Click on image for an interactive view with Cn3D
chromodomain of the Chromodomain Y-like protein family
This group includes the chromodomain found in the mammalian chromodomain Y-like (CDY) protein family, and similar proteins. The human CDY family includes 6 proteins: the genes encoding four of these: two copies of CDY1 (CDY1a, CDY1a) and two copies of CDY2(CDY2a and CDY2b), are located on chromosome Y, and the genes encoding the other two members (CDYL and CDYL2) are located on autosomes. The chromosomal genes are only present in primates, whereas the CDYL and CDYL2 genes exist in most mammalian species. The CDY family proteins contain two functional domains: a chromodomain involved in chromatin binding and a catalytic domain found in many coenzyme A (CoA)- dependent acylation enzymes. CDYL is ubiquitously expressed, whereas CDYL2 shows selective expression in tissues of testis, prostate, spleen, and leukocyte. The CDYL genes are ubiquitously expressed, the CDY genes are only expressed in the testis. Deletion of the CDY1b gene has been shown to be a risk factor for male infertility. Impairments in CDY2 expression could be implicated in the pathogenesis of maturation arrest (a failure of germ cell development).
Statistics
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PSSM-Id: 349284
Aligned: 13 rows
Threshold Bit Score: 92.1245
Created: 30-Nov-2017
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative
Conserved site includes 20 residues -Click on image for an interactive view with Cn3D
Feature 1:putative peptide binding site [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #####               # ####   # #### ##      #  ##  
2MJ8_A         6 LYEVERIVDKRKNKkGKWEYLIRWKGYGSTEDTWEPEHHLLhceeFIDEFNG 57  human
2DNT_A        13 LYEVERIVDKRKNKkGKTEYLVRWKGYDSEDDTWEPEQHLVnceeYIHDFNR 64  human
ELW72275       3 GRQIEKIIDKRKNEkGKTEYLVQWKDYGSEEDTWEPVLHLKnckdFTRAFNR 54  Chinese tree shrew
Q9Y6F8         5 EFEVEAIVDKRQDKnGNTQYLVRWKGYDKQDDTWEPEQHLMncekCVHDFNR 56  human
Q9Y6F7         5 EFEVEAIVDKRQDKnGNTQYLVRWKGYDKQDDTWEPEQHLMncekCVHDFNR 56  human
NP_004671      5 EFEVEAIVDKRQDKnGNTQYLVRWKGYDKQDDTWEPEQHLMncekCVHDFNR 56  Homo sapiens
NP_001116858   6 LYEVESIVDKRKNKkGKTEYLVRWKGYDSEDDTWEPEQHLVnceeYIHDFNR 57  Mus musculus
XP_696879      7 LYEVERIIGKRKNKkGKTEYLVRWRGYSFEGDTWEPEGHLSscieFIHEFNR 58  Danio rerio
Q9Y232        60 ALQVERIVDKRKNKkGKTEYLVRWKGYDSEDDTWEPEQHLVnceeYIHDFNR 111 human
NP_034011     55 ETQVESIVDKRKNKkGKTEYLVRWKGYDSEDDTWEPEQHLVnceeYIHDFNR 106 Mus musculus
CDQ83367       6 LYEVERIMDKRRNKkGKWEYLIRWKGYGSKEDTWEPEHHLLhceeFIDGLHL 57  rainbow trout
NP_689555      6 LYEVERIVDKRKNKkGKWEYLIRWKGYGSTEDTWEPEHHLLhceeFIDEFNG 57  Homo sapiens
XP_006825184   7 VYEVEKILARRESQkGKIEYLVRWKNYTSDDDSWEPLSNLGacivFIEEFNK 58  Saccoglossus kowalevskii

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