1S3S,1I42


Conserved Protein Domain Family
UBX_UBXN2C

?
cd17162: UBX_UBXN2C 
Click on image for an interactive view with Cn3D
Ubiquitin regulatory domain X (UBX) found in NSFL1 cofactor (also known as UBX domain-containing protein 2C (UBXN2C) and similar proteins
UBXN2C, also termed NSFL1C, or NSFL1 cofactor p47, or p97 cofactor p47, UBX1, or UBXD10, belongs to the UBXD family of proteins that contains the ubiquitin regulatory domain X (UBX) with a beta-grasp ubiquitin-like fold, but without the C-terminal double glycine motif. UBX domain is typically located at the carboxyl terminus of proteins, and participates broadly in the regulation of protein degradation. UBXN2C is a major adaptor of p97 (also known as VCP or Cdc48), which is a homohexameric AAA ATPase (ATPase associated with a variety of activities) involved in a variety of functions ranging from cell-cycle regulation to membrane fusion and protein degradation. The main role of the UBXN2C/p97 complex is in regulation of membrane fusion events. It plays an essential role in the reassembly of Golgi stacks at the end of mitosis. UBXN2C also functions as an essential factor for Golgi membrane fusion, which associates with the nuclear factor-kappaB essential modulator (NEMO) subunit of the IkappaB kinase (IKK) complex upon tumor necrosis factor (TNF)-alpha or interleukin (IL)-1 stimulation, induces the lysosome-dependent degradation of polyubiquitinated NEMO without p97, and thus inhibits IKK activation. Moreover, UBXN2C regulates a membrane fusion process, which is required by the maintenance of the endoplasmic reticulum (ER) network, through phosphorylation by Cdc2 kinase.
Statistics
?
PSSM-Id: 340682
Aligned: 7 rows
Threshold Bit Score: 160.867
Created: 26-Jun-2015
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 16 residues -Click on image for an interactive view with Cn3D
Feature 1:UBX-p97 interaction site [polypeptide binding site]
Evidence:
  • Comment:Hexameric p97 N terminal domains are complexed with UBX domain of p47 through a loop that is highly conserved in UBX domains but is absent in ubiquitin.
  • Structure:1S3S; Rattus norvegicus UBX domain of p47/UBXN2C in complex with p97, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                # # ##  ## #                                 ## #               #### # #
1S3S_G        46 INEAEPTTNIQIRLADGGRLVQKFNHsHRISDIRLFIVDARPamaatSFVLMTTFPNKELADEnQTLKEANLLNAVIVQR 125 Norway rat
1I42_A         8 INEAEPTTNIQIRLADGGRLVQKFNHsHRISDIRLFIVDARPamaatSFVLMTTFPNKELADEnQTLKEANLLNAVIVQR 87  Norway rat
AAH68189     288 VDTSQPITSIQIRLADGGRLVQKFNHtHRVSDVRQFVASARPalaatEFVLMTTFPNKELTDEsLTLKEANLLNAVIVQR 367 zebrafish
NP_001279113 288 LNDSEATTSIQIRLADGGRLVQKFNHtHSIQDIRQFIVSARPalaytPFILMTTFPSKELTDEnQTLKDANLLNAVIVQR 367 elephant shark
Q5ZK10       288 IDESEPVTNIQIRLADGGRLVQKFNHnHRIRDIRLFIVDARPamaatSFVLMTTFPNKELTDEnQTLKEANLLNAVIVQR 367 chicken
XP_006003229 289 VSDAEPVTNIQIRLADGGRLIQKFNHsHRVRDVRQFILDARPgmaavSFVLMTTFPNKELTDEdQTLKEANLLNAVIVQQ 368 coelacanth
NP_001080187 289 LNDCEPVTSIQIRLADGGRLVQKFNHsHRIRDIRLFIVNARPamalsRFVLMTTFPNKDLNDEdLTLKDANLLNAVIVQR 368 African clawed ...
Feature 1          
1S3S_G       126 LT 127 Norway rat
1I42_A        88 LT 89  Norway rat
AAH68189     368 LK 369 zebrafish
NP_001279113 368 LK 369 elephant shark
Q5ZK10       368 LT 369 chicken
XP_006003229 369 LK 370 coelacanth
NP_001080187 369 LI 370 African clawed frog

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap