4KVG,3TCA


Conserved Protein Domain Family
RA_MRL_RIAM

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cd16137: RA_MRL_RIAM 
Ras-associating (RA) domain found in Rap1-GTP-interacting adapter molecule (RIAM)
RIAM, also termed amyloid beta A4 precursor protein-binding family B member 1-interacting protein, or APBB1-interacting protein 1, or proline-rich EVH1 ligand 1 (PREL-1), or proline-rich protein 73, or retinoic acid-responsive proline-rich protein 1 (RARP-1), is a member of MRL (Mig10/RIAM/Lpd) family proteins that regulates cell migration and promote lamellipodia protrusion in fibroblast by interacting with Ena/VASP proteins. RIAM regulates cell migration and mediates Rap1-induced cell adhesion. MRL proteins share a common structural architecture, including a central structural unit consisting of an RA domain and a pleckstrin homology (PH) domain, an upstream coiled-coil region, and a number of polyproline motifs. RA domain-containing proteins function by interacting with Ras proteins directly or indirectly and are involved in several different functions ranging from tumor suppression to being oncoproteins. RA domain has the beta-grasp ubiquitin-like fold with low sequence similarity to ubiquitin (Ub). Ub is a protein modifier in eukaryotes that is involved in various cellular processes including transcriptional regulation, cell cycle control, and DNA repair in eukaryotes. RIAM also contains a helical region at the amino terminus for talin binding. RA and PH form a tandem domain pair (RA-PH), and serve tightly coordinated functions in both Ras GTPase signaling via the RA domain and membrane translocalization via the PH domain.
Statistics
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PSSM-Id: 340554
Aligned: 7 rows
Threshold Bit Score: 163.888
Created: 30-Apr-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
RA-PH-RAP1key conserved
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:RA-PH-RAP1 interaction site [polypeptide binding site]
Evidence:
  • Structure:4KVG; Mus musculus RIAM RA-PH domains in complex with GTP bound Rap1, contacts at 4A.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             #    ########               ####              #                 ##  #      
4KVG_B         2 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCnvDWCLYEIYPELQIERVFEDHENvVEVLSDWTRDtENKV 81  house mouse
3TCA_A        33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCnvDWCLYEIYPELQIERVFEDHENvVEVLSDWTRDtENKV 112 house mouse
Q5ZL23       175 KKLVVKVHMYDNSTKSLMVDERQVTRDVLDNLFEKTHCDCsvDWCLYEVYPELQIERFFEDHENvVEVLSDWTRDsENKV 254 chicken
AAH77889     151 KKRIVKVHMIDSSTKTLMVEEHQTVRDVLDNLFEKTHCDCsiEWCLFEVTPELQIERFFEDHENiVEILANWTRDsVNTI 230 African clawed ...
XP_006005293 182 KKLVIKVHMNDESSKTLMVDERQPVREILDNLFEKTHCDCcvDWCLYEINPDLQIERFFEDHENlVEILLHWTRDsENKI 261 coelacanth
XP_007899363 180 KKLVVKVLMNDKSSKTLMVDETQTVREILDNLFEKSHCDCnvDWCLYEVNPDLQIERFLEDDENmVETLSLWMRDsENKL 259 elephant shark
NP_956928    162 KKLVVKVEITDGSSKTLMVDERQTVRDVMDNLFEKTHCDCnvDWSVCETNPDLQTERAFEDHENlVEPLSTWTRDtENKV 241 zebrafish
Feature 1                 
4KVG_B        82 LFLEKEERY 90  house mouse
3TCA_A       113 LFLEKEERY 121 house mouse
Q5ZL23       255 LFLEKKEKY 263 chicken
AAH77889     231 HFLEKNEKY 239 African clawed frog
XP_006005293 262 LFVEHKEKY 270 coelacanth
XP_007899363 260 LFVEQKEKY 268 elephant shark
NP_956928    242 LFQEKKHKY 250 zebrafish

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