Conserved Protein Domain Family
RING-H2_RNF167

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cd16797: RING-H2_RNF167 
RING finger, H2 subclass, found in RING finger protein 167 (RNF167) and similar proteins
RNF167, also known as RING105, is an endosomal/lysosomal E3 ubiquitin-protein ligase involved in alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor (AMPAR) ubiquitination. It ubiquitinates AMPA-type glutamate receptor subunit GluA2 and regulates its surface expression, and thus acts as a selective regulator of AMPAR-mediated neurotransmission. It acts as an endosomal membrane protein which ubiquitylates vesicle-associated membrane protein 3 (VAMP3) and regulates endosomal trafficking. Moreover, RNF167 plays a role in the regulation of TSSC5 (tumor-suppressing subchromosomal transferable fragment cDNA, also known as ORCTL2/IMPT1/BWR1A/SLC22A1L), which can function in concert with the ubiquitin-conjugating enzyme UbcH6. RNF167 is widely conserved in metazoans and contains an N-terminal signal peptide, a protease-associated (PA) domain, two transmembrane domains (TM1 and TM2), and a C-terminal C3H2C3-type RING-H2 finger domain followed by a putative PEST sequence.
Statistics
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PSSM-Id: 319711
Aligned: 4 rows
Threshold Bit Score: 113.986
Created: 23-Mar-2015
Updated: 17-Oct-2022
Structure
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Aligned Rows:
 
Zn binding site
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C H H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on the structures of other RING-H2 fingers with bound zinc
  • Comment:C3H2C3-type RING-H2 finger consensus motif: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-H-X2-C-X(4-48)-C-X2-C, where X is any amino acid and the number of X residues varies in different fingers
  • Comment:A RING finger typically binds two zinc atoms, with its Cys and/or His side chains in a unique "cross-brace" arrangement.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #              # #  #  #           #  #  
Q9H6Y7       228 DVCAICLDEYEDGDKLRVLPCAHAYHSRCVDPWLTqTRKTCPICKQ 273 human
XP_007900646 237 EVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTrTKKTCPVCKQ 282 elephant shark
NP_001158881 239 DVCAICLDEYEEGDKLRVLPCSHAYHSKCVDPWLTgTKKTCPVCKQ 284 Atlantic salmon
NP_001087597 230 DVCAICLEEYEEGDKLRVLPCSHAYHSSCVDPWLTkTKKSCPVCKN 275 African clawed frog

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