2YHO,2YHN


Conserved Protein Domain Family
RING-HC_MYLIP

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cd16523: RING-HC_MYLIP (this model, PSSM-Id:319437 is obsolete and has been replaced by 438186)
Click on image for an interactive view with Cn3D
RING finger, HC subclass, found in myosin regulatory light chain interacting protein (MYLIP) and similar proteins
MYLIP, also known as inducible degrader of the low-density lipoprotein (LDL)-receptor (IDOL), or MIR, is an E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of myosin regulatory light chain (MRLC), LDLR, VLDLR, and LRP8. Its activity depends on E2 ubiquitin-conjugating enzymes of the UBE2D family. MYLIP stimulates clathrin-independent endocytosis and acts as a sterol-dependent inhibitor of cellular cholesterol uptake by binding directly to the cytoplasmic tail of the LDLR and promoting its ubiquitination via the UBE2D1/E1 complex. The ubiquitinated LDLR then enters the multivesicular body (MVB) protein-sorting pathway and is shuttled to the lysosome for degradation. Moreover, MYLIP has been identified as a novel ERM-like protein that affects cytoskeleton interactions regulating cell motility, such as neurite outgrowth. The ERM proteins includes ezrin, radixin, and moesin, which are cytoskeletal effector proteins linking actin to membrane-bound proteins at the cell surface. MYLIP contains an ERM-homology domain and a C-terminal C3HC4-type RING-HC finger.
Statistics
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PSSM-Id: 319437
Aligned: 11 rows
Threshold Bit Score: 52.1327
Created: 2-May-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:Zn binding site [ion binding site]
Evidence:
  • Structure:2YHO; Homo sapiens MYLIP (also known as IDOL) binds two Zn2+ ions through its RING-HC finger.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1         #  #           # #   #  #      #  #  
2YHO_A        20 LCMVCCEEEINsTFCPCGHTVCCESCAAQLQsCPVCRS 57  human
2YHN_A        20 LCMVCCEEEINsTFCPCGHTVCCESCAAQLQsCPVCRS 57  human
Q6TEM9       383 LCMLCCEEEIDaAFCPCGHMVCCQNCAAQLQsCPVCRS 420 zebrafish
NP_001085668 386 LCMLCCEEEINsAFCPCGHMVCCEGCATQLQsCPVCRA 423 African clawed frog
NP_001012579 386 LCMVCCEEEINsTFCPCGHTVCCKACAAQLQsCPVCRS 423 chicken
XP_006002927 384 LCMVCCEEEINsTFCPCGHMVCCKPCASQLElCPICRS 421 coelacanth
XP_007900802 386 LCMVCCGEEINtAFCPCGHMVCCDTCASQLQaCPVCRS 423 elephant shark
Q8WY64       386 LCMVCCEEEINsTFCPCGHTVCCESCAAQLQsCPVCRS 423 human
Q05AK5       380 TCALCCEQEISaAFCPCGHMFCCYNCASQLQcCPVCRS 417 zebrafish
XP_006813272 412 LCQVCLDNKIStAFCPCGHMMCCVPCAQECKkCPLCRA 449 Saccoglossus kowalevskii
ESO95088     388 TCLVCRDNSIQtALCPCGHVICCQSCAEQLTeCPMCRS 425 owl limpet

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