3JBR


Conserved Protein Domain Family
VGCC_beta4Aa_N
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pfam12052: VGCC_beta4Aa_N (this model, PSSM-Id:314861 is obsolete and has been replaced by 463445)
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Voltage gated calcium channel subunit beta domain 4Aa N terminal
The beta subunit of voltage gated calcium channels is coded for by four genes 1-4. Gene 4 can produce two types of beta4A domain (beta4Aa and beta4Ab) according to how the gene splicing is carried out. This family is part of the beta4Aa N terminal domain. It is made up of an alpha helix and a beta strand. It is thought to regulate the channel properties through protein-protein interactions with non Ca channel proteins.
Links
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Statistics
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PSSM-Id: 314861
Aligned: 16 rows
Threshold Bit Score: 57.4937
Created: 22-Jul-2016
Updated: 4-Aug-2016
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
3JBR_B         4 GSADSYTSRPSd-SDVSLEEDREAVRREAERQAQAQLEKAKTK 45  Norway rat
XP_009907741 146 GSADSYTSRPSd-SDVSLEEDREAIRQEREQQAAIQLERAKSK 187 downy woodpecker
XP_009017056  15 GSFESNCSQNS--SNLSLEEEQESIRKNAEKLAQTMLEKARTK 55  Helobdella robusta
CAF93659       2 GSADSYTSRPSd-SDLSAEEDREACRREAERQAQLQLDRAKSK 43  spotted green pufferfish
XP_012811902  14 GSADSYTSRPSldSDVSLEEDRETARREVERQAQEQLERARLK 56  western clawed frog
XP_015835937  86 GSADSNYSQPS--SDLSLDEEKETLRREKERQALSQLEKARTK 126 red flour beetle
XP_014369054  18 GSADSNYSQPS--SELSLDEDKEALRREKEAQALSQLDKARSK 58  common yellow swallowtail
XP_002411868   9 GSADSNYSQPS--SDLSLDEDRENTRRETERLALAKLQSAREK 49  black-legged tick
XP_015782172   4 GSADSNYSQLS--SDLSLDEEREAIGRETERQAFAQLEKARSK 44  two-spotted spider mite
XP_016306102  16 GSADSYTSRPSd-SDVSLDEE-QGGRQEKEQQATIQLERAKAK 56  Sinocyclocheilus anshuiensis
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