Conserved Protein Domain Family
4_1_CTD

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pfam05902: 4_1_CTD (this model, PSSM-Id:310467 is obsolete and has been replaced by 461774)
4.1 protein C-terminal domain (CTD)
At the C-terminus of all known 4.1 proteins is a sequence domain unique to these proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24-kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates.
Statistics
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PSSM-Id: 310467
Aligned: 13 rows
Threshold Bit Score: 108.731
Created: 20-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
BAB12159       10 EKNSLRVEGDNIYVRHSnlmlEI----------DGG-AGGDSGTLLTAQTITSESVSTTTTTHITKTVKGGISETRIEKR 78   crab-eating m...
ELV12560      713 DVPLVHTETRTITYEAA----QT----------DDRsGDLDPGVLLTAQTITSETTSSTTTTQITKTVKGGISETRIEKR 778  Chinese tree ...
XP_014268878  778 DMPVIHTETKTITYEAA----EV----------ETN-GDADPGVLLSAQTITSETTSTTTTTHITKTVKGGISETRIEKR 842  zebra mbuna
AAI52369       97 EVPVVHTETKTITYESS----QV----------DPG-ADLEPGVLMSAQTITSETTSTTTTThiTKTVKGGISETRIEKR 161  house mouse
XP_005994429  646 RKEAVTTSHTAITETRS-----V----------SPVtNSSGKQTATNVQAVAAETISTSTTTHVTKTAKGGYSETRIEKR 710  coelacanth
XP_010591323  990 EVPIVQTETKTITYESP----QV----------DGG-XGDDSGTLVSAQTITSDSVSTTTTTHITKTVKGGISETRIEKR 1054 African savan...
XP_012062222   61 TVPVVATETRKVALESE------------------DgNYSATGEIVSTQTISSKTRTVETIT--YKTEKDGVVETRVEQK 120  Atta cephalotes
EJW82583      288 QAPIVETIDNKLTCEPAndvdKI----------SGNdYSDIPGELVSSHTVTQGSRTIETIT--YKTEKNGTVETHVEHR 355  Wuchereria ba...
XP_011435940  995 NVPIVKTQTRTVTYEKDgfpvVI----------E-------DGILISSQSHSTRTQTIETTT--YKTERDGKTETRVEKK 1055 Pacific oyster
XP_011674353  570 DVPYVKTENTTITYEKD----PE----------DAVdGDEDPGTLISAQTMTSETRSMTTTTHITKTVKGELTETRVEKK 635  purple sea ur...
XP_002126269  788 QPPIVQTETKTITYESS----TVrsqnepaqaeSSR-TDEHQSELVSSQIISSETEYTVTTTEITKIVHGSVSETVMEKQ 862  vase tunicate
KTF91799      235 DLPIVHTETKTITYESA----QP----------NTL-SEKESGMLLSAQTITSETVSTTTTTQITKTVKGGISETRIEKR 299  common carp
XP_016531342  280 EVPIVHTETKTITYEAA----QL----------DGN-SDGEPGVLMTAQTITSESLCTTTTTHITKTLKGGLSETRIEKR 344  Amazon molly
BAB12159       79 IVI--TGDAD-IDHDQA---------LAQAIREAREQHPDMSVTRVVVHKETE 119  crab-eating macaque
ELV12560      779 IVI--TGDAD-VDHDQV---------LVQAIKEAKEQHPDMSVTKVVVHQETD 819  Chinese tree shrew
XP_014268878  843 IVI--TGDAD-IDHDEA---------LAQAIKEAKEQHPDMSVTKVVVHKETE 883  zebra mbuna
AAI52369      162 IVI--TGDAD-IDHDQA---------LAQAIKEAKEQHPDMSVTKVVVHKETE 202  house mouse
XP_005994429  711 III--TGDED-VDQDQA---------LALAIKEAKQQHPDMLVTKAVVYKEpm 751  coelacanth
XP_010591323 1055 IVI--TGDGD-IDHDQA---------LAQAIKEAREQHPDMSVTRVVVHKETE 1095 African savanna elephant
XP_012062222  121 ITI--QSDGDpIDHDRA---------LAEAIQEATAMNPDMTVEKIEIQQQTa 162  Atta cephalotes
EJW82583      356 VTI---HSCDdIDHDAE---------LSQAILEATNMNPDMTVEKIEVKHESQ 396  Wuchereria bancrofti
XP_011435940 1056 VVIsqEENGDdIDHDAL---------LAEAIKSVTEMNPDLSVERIECMRQie 1099 Pacific oyster
XP_011674353  636 IVI--QADGD-LDHDKEmteaqvralLAETLAEEQLQNPDFQVTRIVIQKEGE 685  purple sea urchin
XP_002126269  863 VVS--TGDASvDDHHKA---------MADMIRDA-QLNPNLSITKVVVHEErp 903  vase tunicate
KTF91799      300 IVI--TGDTE-IDHDKA---------LAQAIKEAKEQHPDMSVTKVVVHQETE 340  common carp
XP_016531342  345 IVI--TGDCD-IDHDQA---------LAQAIKEAKEQHPDMSVTRVVVHKETE 385  Amazon molly
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