Conserved Protein Domain Family
Filament_head

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pfam04732: Filament_head (this model, PSSM-Id:309741 is obsolete and has been replaced by 461414)
Intermediate filament head (DNA binding) region
This family represents the N-terminal head region of intermediate filaments. Intermediate filament heads bind DNA. Vimentin heads are able to alter nuclear architecture and chromatin distribution, and the liberation of heads by HIV-1 protease liberates may play an important role in HIV-1 associated cytopathogenesis and carcinogenesis. Phosphorylation of the head region can affect filament stability. The head has been shown to interaction with the rod domain of the same protein.
Statistics
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PSSM-Id: 309741
Aligned: 45 rows
Threshold Bit Score: 46.9992
Created: 20-Jul-2016
Updated: 4-Aug-2016
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q05AI8         9 SSSSSYRRMFGGpgymtppmsRGVFGRASTGG-SGSSRVSSRVYEVSKSstsSPGFSGYRASSYSMpnlsagytrsyggm 87  zebrafish
Q6DDQ8         6 LYTSSYKKIFGD---------SPRSSSHLYTS-SGGG-SSSRSYRPREAy--TSSISSYRKVSRSPghl--------ssa 64  African clawed ...
P35616         9 YYTP-YKRRVVE------------SSPRVHIR-SSYVSPSRTTYS-------PLVSTTMRRSYATSssss------flps 61  African clawed ...
Q02916         9 FFPS-YKRRYAD-----------SPRLHVSAMrSGGYSSARSAYSSLS----APVSSVSVRRSYATssasg----sllhs 68  Japanese quail
Q4SG66         7 YTQSSYRKIFGDsl-----rlSVSSSRMSRAS-SGLRA--------------MPPSHGPVSAYRRVgrpsga---fsvmp 63  spotted green p...
Q4S7N7         8 YSSSSYRKIFGD-------------SPRYA-S-SPSRNLSSRGGYRYSSs--SSVGRSNISSLGAHsrksgr---slamp 67  spotted green p...
Q16352        10 CSSSSYRKVFGD---------GSRLSARLSGA-GGAGGFRSQSLSRSNVa--SSAACSSASSLGLGlayr------rppa 71  human
Q58EH1         8 YSASSYRKIFGDst-----rfSASPSRLSSSR-SGFK---SQSVNR------PNIPSSYKRSTRSGfps---------ss 63  zebrafish
XP_008149686   9 YYSTSYKRRYVE-----------TPRVHISSV-RSGYSTARSAYSSYSA---PVSSLSVRRSYSSSsgsl-------mps 66  big brown bat
NP_001138256   8 YMSSSYRKLFGDnp-----rfAGSRMSNVSPR-SSMSSSGFRSQSVSRSs--ASPAGYYKRSGRSSsfs--------pvh 71  zebrafish
Q05AI8        88 GETLDFSLADALNQEFLHTRT 108 zebrafish
Q6DDQ8        65 QDHFDLSQSTALSNELKIVRT 85  African clawed frog
P35616        62 VDTMDLSQVAAISSDLKIVRT 82  African clawed frog
Q02916        69 VDSLDLSQVAAISNDLKSIRS 89  Japanese quail
Q4SG66        64 AESLDLTQTSVVNNELKVIRT 84  spotted green pufferfish
Q4S7N7        68 LDTVDLAQSSVLNNEFKIIRT 88  spotted green pufferfish
Q16352        72 SDGLDLSQAAARTNEYKIIRT 92  human
Q58EH1        64 LDSFDFTQSTVLNNEFKIIRT 84  zebrafish
XP_008149686  67 lENLDLSQVAAISNDLKSIRT 87  big brown bat
NP_001138256  72 FDSVDFSQTSVLNNEFKIVRT 92  zebrafish
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