Conserved Protein Domain Family
Retrotrans_gag

?
pfam03732: Retrotrans_gag (this model, PSSM-Id:309014 is obsolete and has been replaced by 367628)
Retrotransposon gag protein
Gag or Capsid-like proteins from LTR retrotransposons. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Statistics
?
PSSM-Id: 309014
Aligned: 56 rows
Threshold Bit Score: 61.5816
Created: 18-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q9FGL3  131 SMV--------KSWILNSVTKQIYKsilrf----ndaaeIWKDLDTRFHITNLP--RSYQLTQQIWSLQQGNMSLSDYYT 196  thale cress
Q9HFY8  148 VHAatflrgraLAWFEPLQQEWLDNpvekysqevrniffSFDGYVKALQSLFLDpdEKRQAERDLSNLRQ-NKSATLYAA 226  Colletotrichum gloe...
Q9UVC2   52 IFAttflrgraQHWVKPFLRKYLDSngedna---dgvfkSYNHLKHAMKSVFGVsnEIATAVRVIQHLTQ-KTSTAEYAA 127  Passalora fulva
Q7TN75  174 CFVtsmligraARWATAKLQRCTYLm------------hNYTAFMMELKHVFEDpqRREAAKRKIRRLRQGPGPVVDYSN 241  house mouse
O93283  149 GFItslladkaLSWAIAAVDLDPRLs------------sDYSAFRREFKAVFEHptYGEDAASRLLALQQGSRSVAEYTL 216  torafugu
Q98SV9  117 AFVvnllsgraAQWATAVLENQTPAs------------sSFPEFTAELKRVFDHpiQSGEAASQIRSLRQGSSSVADY-- 182  torafugu
Q9C7H8  150 KMVaihfdshaATWHHSFIQSGIGLdv----------ffNWPEYVKLLKDRFEDa-CDDPMAE-LKKLQE-TDGIVEYHQ 216  thale cress
Q9FYC9  102 DIAsihfddidATWHQSIVQSIMWRhv----------rhDWWNYKLLLQVRYNK--HVDDSIAKLKLLQE-TEGIEVYHA 168  thale cress
Q9SX87  132 SIAstlcdgaaAKWYKSLFESDFGVkl----------lsNWNMYKLLLEEHFAE--VLDDPISELKQLKE-TNGIEEYHK 198  thale cress
Q9LP90  163 ALVsvsvsgeaLSWYNWAISRGDFV--------------SWLKLKSGLMLRFGNlkLRGPSQS-LFCIKQ-TGSVAEYVQ 226  thale cress
Q9FGL3  197 TLKTLWDDLDgascVNTCrnckccsatasvneHSKIVKFLAGLND 241  thale cress
Q9HFY8  227 EFRRLAARLD-----MTD--------------ESKVFAFYQGLKD 252  Colletotrichum gloeosporioides
Q9UVC2  128 KFQEYAQLTD-----WDD--------------EALQVMYRRGLKE 153  Passalora fulva
Q7TN75  242 AFQMIAQDLD-----WTE--------------PALMDQFQEGLNP 267  house mouse
O93283  217 EFRILAAESR-----WGE--------------TALRSAYRRGLSE 242  torafugu
Q98SV9  183 -FRILAARSG-----WND--------------TALRGVFTQGLAE 207  torafugu
Q9C7H8  217 QFELIKVRLN-----LSE--------------EYLVSVYLAGLRT 242  thale cress
Q9FYC9  169 RFESICTRVK-----LDE--------------DFLVSLYLTGLKT 194  thale cress
Q9SX87  199 KFELLRARVN-----LSE--------------DYLVRVYLDGLHP 224  thale cress
Q9LP90  227 RFEDLSSQVG----GLDD--------------QKLEGIFLNGLTG 253  thale cress
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap