Conserved Protein Domain Family
LIM_bind

?
pfam01803: LIM_bind (this model, PSSM-Id:307769 is obsolete and has been replaced by 426444)
LIM-domain binding protein
The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions.
Statistics
?
PSSM-Id: 307769
Aligned: 100 rows
Threshold Bit Score: 108.873
Created: 15-Jul-2016
Updated: 4-Aug-2016
Structure
?
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Q2R940        345 RLTHYMYHQQNR--PQDNNIEYWRNFVNEYFSPNAKKRWCVSLygsgrqttgvf----------------------pqdv 400  Japanese rice
Q6BUM0        245 RILNLIDQISNEsyDNLSKLGFWQKVIQLYCVPTCTMRLTTTPpsskytntnnkp---------------------sndk 303  Debaryomyces ...
Q59Y46        342 RVLDLIEFISNQhyENLSNIEFWTKITPANFLPTAILKFNTTNitgangnkslnditglnlnflnsnkatsnnnnnntnt 421  Candida albic...
XP_003677389  144 RIRQMILYVNNSk-DNMNNVSYWKRFVEEFFDRDCQLNISMRL------------------------------------- 185  Naumovozyma c...
XP_002490914  102 KFLEFCELAGARs-K-LHDKEYWQKVSEDYFTPEGTISFVLKKdnkss-------------------------------- 147  Komagataella ...
EMG50537      887 RILDLIDFISNQqyENLSSIEFWTKITPANFLPSAILKFNTINtsgsntgsnnlsihdi-------------tglnlnfl 953  Candida malto...
XP_002547637  368 RILDLIDFISNQsyENLSNIDFWTRITPANFLPSAILKFNFLgngssgtslhevtg-----------------lnlnflq 430  Candida tropi...
XP_002617090  279 RILDLIDLVSNEsrENLSSIDFWNRLVYSYFSSTSVMRFTTTGatvnqpmt----------------------------g 330  Clavispora lu...
XP_004194693  285 RIINLIDMISNEsiNNLSKIEYWQNIVSIYASPSCVLKLTTPPvptmggispnmn---------------------npts 343  Pichia farino...
XP_001384163  232 RVLEFIEQISNEspENLTSIEYWQRLIHTYCMPTSIFRISTAAtlpsssgifshgaamkp-----------nlfnvsfld 300  Scheffersomyc...
Q2R940        401 whceicnRKPG----RGFETTVEVLPRLCQI-KYASGTLEELLYVDMPRESQNASGQIVLDYTKAIQESVFEQ-L-RVVR 473  Japanese rice
Q6BUM0        304 ftldpeqNRVP----RQFELNTLTAPRFFLAqILSGQVSKLSITLPGLKFQVMNNSSI-FIISRLSIQYNYVDgS-VSNV 377  Debaryomyces ...
Q59Y46        422 ntnnsnnNNKP----HQFELTTSTAPRFFAScIQTESILKCNISLSGSKFQVLSNGSI-VIVSKIGLHFHYKDgS-NSAL 495  Candida albic...
XP_003677389  186 -------GSEI----EIFEILGILLPQMVLQ-FGHMGVMKLEITPGEIHTQLLNDGTKFFDCLSNTYYFHYED-GsHHKL 252  Naumovozyma c...
XP_002490914  148 --dtpngGPDSipqlRHFEMLTSLIPQFVTG-WISPGVESVDIFPLLIKVEILANGSTYIESRKFCLKYTFKD-GsHFDI 223  Komagataella ...
EMG50537      954 kinpnnnGNGV----QQFELNTSTAPRFFVScVKAKNILKCNINMSGSKFQVLNNGSI-IIVSKIELNFGYQDgS-NSVI 1027 Candida malto...
XP_002547637  431 lnadsnnPNSP----HQFELNTSTAPRFFVScVQAKTIIRCSITLSGSKFQVLNNGSI-IIVLKIELHFNYQDgS-NSVS 504  Candida tropi...
XP_002617090  331 llegfahGSEP----YSYELNAATAPRFLLAvVLAQNVATHQVTLPGIKFQVMNNGSL-FIVSRLQALITYLDgS-VGNL 404  Clavispora lu...
XP_004194693  344 faldkgpTGAP----KQYELAGVSIPRLAVAhLQANDTTNFTIALPGLKFQVMNNGSI-FLLSKLALQFTYMDgS-IAHI 417  Pichia farino...
XP_001384163  301 anldttsGVSS----KFFELTTAFAARFFVTnVIIGNVAKFYVALPGLKFQVMNNGSI-FLISRLQQQYIYNDgS-IANL 374  Scheffersomyc...
Q2R940        474 EGHLRIVFNPDLKIASWEFCARRHEELIPRRSIIPQVSQLG--AVVqkyqsavqnSTN----LStqdmqnncnsf--vac 545  Japanese rice
Q6BUM0        378 TGTFKMLMNREFRIEWIDCQCFNIQSSIGFETLEKQWTNFS---------------QSqsenDKkehgksq--------- 433  Debaryomyces ...
Q59Y46        496 HGTIKILMSKDLRIEWVDLNFSDYQSNISVSALEEKLKSI----------------ITdntsITkkdikrq--------- 550  Candida albic...
XP_003677389  253 YLELHGIFTVDLKVKWIDVQVRGSTYCVDWNSVESLVTGKT---VQ---------NIVagptPTedndnenenkieiede 320  Naumovozyma c...
XP_002490914  224 TGIARVVYNQQLKIDLFEFQDVETSRAVDLKSLYSTFEKCLkrSTI---------ESGkaerHNdletesqlnlp--fal 292  Komagataella ...
EMG50537     1028 RGAIKILMSRDLRIEWIDLNCSDYQSNISIQALEPKLKSL----------------IDtkkdLKkqke------------ 1079 Candida malto...
XP_002547637  505 RGTVKILMSRDLRIEWIDLNCADYQGNISMSALETKLKAI----------------IDskkdFKkqke------------ 556  Candida tropi...
XP_002617090  405 QGTCRILLSRDFRIEWLDCRCLNYQSSITMRALETHWASFD--NTSg--------Gnfv--------------------- 453  Clavispora lu...
XP_004194693  418 NGACRMLLNGAFRIEWIDCRCMEYKATVSIEGLEKQWGNLL--LG-----------HSlgqpDdmm-------------- 470  Pichia farino...
XP_001384163  375 TGNVKLVMNRDLRIESVDIQYLSYQPSISFPALEAGWKLYM--ESKs-------kEMNkgpyDSkef------------- 432  Scheffersomyc...
Q2R940        546 arqlakaLEVPLV-------------N-----DLGYTKRYVRCLQIAEVVNCMKDLIDYSrQN-GSGPIASLH 599  Japanese rice
Q6BUM0        434 -qeffnyLHQSSS-------------AislsdTCGLHEDAFRVLQVGDVMSNLRALMGFSaANnVASPMKALE 492  Debaryomyces hansenii
Q59Y46        551 -kelldeLVKNSQ-------------AsklqlTFGIEPQSLRILQLGDVMSSMKSLMEFSmVNnIPSPMKSME 609  Candida albicans SC5314
XP_003677389  321 dkkkmkeLQSHFN-------------VfknttEFGIIKNMARLFQVNQVMSKMIDLMKYHrKInSVNPITSLN 380  Naumovozyma castelli...
XP_002490914  293 eeevlsnKQSSMIkmiadevlnasgqN-----TLDMDKKFHSLLQLYDTFSIMSTLVEFStANgIASPLESLD 360  Komagataella pastori...
EMG50537     1080 ---lvdeILSSSH-------------AvqaglTSGIDSQSMRILQIGDIMTSMKSLMEFSmVNnISSPLKSLE 1136 Candida maltosa Xu316
XP_002547637  557 ---sldeMISTSH-------------AvrlgaTSGIDAQSMRILQLGDIMTSMKSLMEFSvVNnVSSPLRSLE 613  Candida tropicalis M...
XP_002617090  454 -----esLSKNSE-------------SvraasNSGIHPNAMRVMQLGSLMSYLKPLMSFAaANnHASPLSALE 508  Clavispora lusitania...
XP_004194693  471 -----nrLRERLV-------------AtrvakSSGFAPDVMRLVQVGDIFSHLRALIGFSaANnLTSPLKAIE 525  Pichia farinosa CBS ...
XP_001384163  433 ----lsqIHRTAE-------------AirntpGSGMHENVMRILQVGDVMSQLKPLMGFStINsINSPLKSLE 488  Scheffersomyces stip...
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap