3J38,3J3A,4W22,1N0V,1U2R


Conserved Protein Domain Family
EF2_snRNP_III

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cd16261: EF2_snRNP_III 
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Domain III of Elongation Factor 2 (EF2)
This model represents domain III of Elongation factor 2 (EF2) found in eukaryotes and archaea, and the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis are important for the function of the U5-116 kD/Snu114p.
Statistics
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PSSM-Id: 293918
Aligned: 36 rows
Threshold Bit Score: 101.11
Created: 23-Jul-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
3J38_z  489 PVVRVAVEPknPADLPKLVEGLKRLAKSDPMVQCIIEES-GEHIIAGAGELHLEICLKDLEEdhaCIPLKKSD 560  fruit fly
O28385  388 PVVTMAIEAknPRDLPKLIEVLRKLAKEDPTLHITLNEEtGEHLISGMGELHLEVKVEKIRRd-yKLDVITSP 459  Archaeoglobus fulgidus DSM...
Q74M52  402 PVVTKAIEPkdPRDLPKLIEVLKLIQKEDPTLKVEIDQEsGQILISGLGDLHLEIVEYRIKNd-fKVDIITSN 473  Nanoarchaeum equitans Kin4-M
O27131  391 PVVTVAVEAknTKDLPKLIEVLRQVGKEDPTVRVEINEEtGEHLISGMGELHLEIIAYRINEk--GVEIETSE 461  Methanothermobacter therma...
A0RW30  389 PVVQIAVEPkhPKDLPRLVEVLKQLTIEDPNLVVKIDEEsGETIVSGMGVLHLDVATHRIQDa--KVEIITSE 459  Cenarchaeum symbiosum A
Q8TXJ4  913 PVVTVAVEAknTQDLPKLIEILHQIAKEDPTVKVEINEEtGQHLVSGMGELHLEIIAHRIKEr--GVDIKVSE 983  Methanopyrus kandleri AV19
P26752  389 PVVTLAIEAkhTADLPRLIEVLRDISKADPSIQVDINQEtGEHLISGMGELHLDVTLYRIKNd-yKVEVETSD 460  Thermoplasma acidophilum D...
Q8TRC3  390 PVVTVAVEAkhTKDLPKLIEVLRQVAKEDPTLQITLDEEtGEHLMAGMGELHLEVIAHRIERd-kNVEITTSK 461  Methanosarcina acetivorans...
Q3IUM4  391 PVITKSVEAknMDDLPKLIETLQQVAKEDPTIQIEINEDtGEHLISGQGELHLEVITQRIERn-qGIPVNTGE 462  Natronomonas pharaonis DSM...
Q58448  391 PVITVAIEAknTKDLPKLIEVLRQVAREDPTVKVEINEEtGEHLLSGMGELHIEIITKLKIErdaGIPVEVGQ 463  Methanocaldococcus jannasc...
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