4B87


Conserved Protein Domain Family
SNM1A-1C-like_MBL-fold

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cd16273: SNM1A-1C-like_MBL-fold 
Click on image for an interactive view with Cn3D
SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
Includes human SNM1A (SNM1 homolog A, also known as DNA cross-link repair 1A protein) and Saccharomyces cerevisiae Pso2 protein (PSOralen derivative sensitive 2, also known as SNM1, sensitive to nitrogen mustard 1), both proteins are 5'-exonucleases and function in interstrand cross-links (ICL) repair. Also includes the nuclease artemis (also known as SNM1C, SNM1 homolog C, SNM1-like protein, and DNA cross-link repair 1C protein) which plays a role in V(D)J recombination/DNA repair. Purified artemis protein possesses single-strand-specific 5' to 3' exonuclease activity. Upon complex formation with, and phosphorylation by, DNA-dependent protein kinase, artemis gains endonucleolytic activity on hairpins and 5' and 3' overhangs. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.
Statistics
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PSSM-Id: 293831
Aligned: 63 rows
Threshold Bit Score: 161.939
Created: 30-Apr-2015
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 8 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                   # # ##                               
4B87_A        16 ESSNvggsrkKTCPFYKkipgtGFTVDAFQYGVVEgCTAYFLTHFHSDHYAGLSKHFt---------FPVYCSEITGNLL 86  human
XP_002935298   1 MSSFm-----GRMKEYP-----AISIDRFDRENLS-ARAYFLSHCHKDHMKGLRAPFlkrrlqnslkVHLYCSPVTKELL 69  western clawed ...
CDS27234      42 NISRknisdnKECPRYKwlmntPFTVDAFRYGLITgCSGYFLTHFHYDHYIGLTPKFt---------GTIYCSEITAKLL 112 Hymenolepis mic...
Q38961       133 RDSSfsndspRPCPFYKklpgtPFTVDAFRYGCVQgCSAYFLTHFHADHYIGLTKAWs--------hGPIYCSSLTSRLL 204 thale cress
KER25557      58 PPAFqkytksKPCPFYKwipdtPLTVDAFNYGVIKgCEAYILSHFHSDHYNGLSASFp---------GTIYCSAVRRLNN 128 Opisthorchis vi...
CCD78494      46 SKSNplektpRKCPFYKwipdtSITVDAFCYAEIPgCTCYFLSHFHFDHFRGIHKNFk---------GDIYCSEVTKNLL 116 Schistosoma man...
ELT87607     288 NKQPwtarikKQCPFYKkipgtSFTVDAFNYGAIPgCRAYFLSHFHYDHYGGLTKKFq---------QQIYCCKVTGNLV 358 Capitella teleta
EDV20779      28 SNKWndpkgkRKCPFYKkitgtTFCVDAFSYGPISgITAYFLSHFHSDHYYGLNKTFn---------AKLYCNKITANLV 98  Trichoplax adha...
EGD81264     355 ASTHglprrlRQCPFYKwvkdtSFTVDAFSYGAIPnCTAYFLSHFHADHYTGLTKSFp---------AKVYCSEATARLC 425 Salpingoeca ros...
KJE92159     548 FSAAgaskavRPCPFYKrmpdtTFVVDAFRFGRIAgCTGYFLTHFHSDHYGGLSKGWr--------hGPIYCSEATANLA 619 Capsaspora owcz...
Feature 1                                                             ##                     #   
4B87_A        87 KNKlh----------vQEQYIHPLPLDTECIVng----------vKVVLLDANHCPGAVMILFYlpn-gtVILHTGDFRA 145 human
XP_002935298  70 LTNpky--------afWENRMISIEIDTPTQIslvdeatgykedvVVTLLPAGHCPGSVMFLFQgn--sgTVLYTGDFRL 139 western clawed ...
CDS27234     113 KNKf-----------gQLLSIVALPTDVFINVng----------fDIYLLDANHCPGSVLILCRhpt-gnVHLHTGDFRA 170 Hymenolepis mic...
Q38961       205 RLSls----------vNPSSIHPLELDVEYTIng----------iKVTLIEANHCPGAALIHFRlld-gtCYLHTGDFRA 263 thale cress
KER25557     129 FLStqvtkslvrikfgGNLKVVAIPLNESFPIcg----------iDVVAMDANHCPGSVMFLFHlksmkrFILHTGDFRF 198 Opisthorchis vi...
CCD78494     117 RDAy-----------gSGLVINVLEIEKSTKIgn----------vEVTALDANHCPGSLMFLFYvpskqrTYLHTGDFRY 175 Schistosoma man...
ELT87607     359 ERKlg----------vASKRVRKLEMNTLYVIeg----------vEVTLLDANHCPGSVLFLFRlen-grSILHTGDFRA 417 Capitella teleta
EDV20779      99 SRMlh----------vEKQYITILPMHQSVVVdd----------vEVTLLDANHCPGSAMFVFRlrn-gsVHLHTGDFRA 157 Trichoplax adha...
EGD81264     426 TLLlr----------vPPEKLNPLPMNTPVKVqg----------vTVELIDANHCPGAAVIVFTlps-grRHVHTGDFRA 484 Salpingoeca ros...
KJE92159     620 VHVlg----------vADDMLHRLPMDREVTVdg----------vGVTLIDANHCPGSCLIKFVlpd-grVYLHTGDFRA 678 Capsaspora owcz...
Feature 1                                           #      
4B87_A       146 DPSMERSLLADq----------------kVHMLYLDTTYCSP 171 human
XP_002935298 140 AKGEVARMELLhsgn----------rvkdIESVYLDTTFCDP 171 western clawed frog
CDS27234     171 QASMLEAPSPLtefml---------pkqrISNLYLDTTFCAP 203 Hymenolepis microstoma
Q38961       264 SKQMQTHPLLFnq---------------rVHVLYLDTTYCNP 290 thale cress
KER25557     199 HLDMLLPPSPLadivgmhlipvsgkaipqLHTVYLDTTYCSS 240 Opisthorchis viverrini
CCD78494     176 TPSMLTHPSILtnyisdns---askklprIHSIFLDTTYCSS 214 Schistosoma mansoni
ELT87607     418 NVDMESYPALQgv---------------kISQLYLDTTYCDP 444 Capitella teleta
EDV20779     158 SEEMEKLDILKns---------------vISELYLDTTYCDP 184 Trichoplax adhaerens
EGD81264     485 CEAIWQHTSIAgk---------------rIHTVYLDTTYCDP 511 Salpingoeca rosetta
KJE92159     679 DPAMLAHQALAqc---------------rFAMLYLDTTYCDP 705 Capsaspora owczarzaki ATCC 30864

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