2VXD


Conserved Protein Domain Family
NPM1-C

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pfam16276: NPM1-C (this model, PSSM-Id:292893 is obsolete and has been replaced by 465081)
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Nucleophosmin C-terminal domain
This domain, approximately 50 residues in length, is mainly found in Nucleophosmin proteins in mammalia species. Nucleophosmin, a nucleocytoplasmic shuttling protein, is related with cancer and involved in serveral cellluar functions, such as ribosome maturatation and export, centrosome duplication, and response to stress stimuli. This domain has a three-helix bundle which can bind G-quadruplex DNA and the interaction involves helices H1 and H2 of the NPM1-C domain mainly through electrostatic contacts with G-quadruplex phosphates, indicating a crucial role in rescuring its function in leukemia.
Statistics
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PSSM-Id: 292893
Aligned: 14 rows
Threshold Bit Score: 77.083
Created: 24-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
2VXD_A         6 DIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMTDQEAIQDLWQWRKS 53  human
AAI53487     231 DIKSKMMESVAKGVSLPKVQLKFENYVNNCFKGTDPKVVEELWKWRQT 278 zebrafish
XP_005726605 260 EIKSKLSTAAKEGKPLPKTEPKFENYLRSAFKISDKQVVKDLWSFVQT 307 Pundamilia nyererei
AAH93285     257 EVKSKLTSAAKEGKPFPKTEQKFENFARSSFKISDKQVIKDLWNFVQS 304 zebrafish
XP_009566431 164 EIKAKMQASVDKGCSLPKLEPKFANYVKNCFRTEDQKVIQALWQWRQT 211 common cuckoo
XP_007231227 246 EIKAKILASVEKGVSLPKLQPKFENLVKNGYKVSDPKVFFVLWllifw 293 Mexican tetra
XP_005803659 251 QLKIKLMEAMKKGVMLPKVQPKFENFVKNSNKVCDPQIIADLWKWRQS 298 southern platyfish
XP_006631815 230 EIKAKMMVGVEKGVMLPKVEAKFENFVKNGFKVDDKNTIQELWKWRQT 277 spotted gar
XP_006002510 148 EIKVKMQQSVEKGVFLPKVEAKFFNFVKNGFRQDNPKVIQELWKWRQS 195 coelacanth
XP_012814195 222 EIKAKMQTSLEKGTVLPKVEVKFANYVKNCFRTENQKVIQDLFKWRQS 269 western clawed frog
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