Conserved Protein Domain Family
CLN5

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pfam15014: CLN5 (this model, PSSM-Id:291675 is obsolete and has been replaced by 464446)
Ceroid-lipofuscinosis neuronal protein 5
Statistics
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PSSM-Id: 291675
Aligned: 11 rows
Threshold Bit Score: 546.251
Created: 1-Jul-2015
Updated: 5-Aug-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Q28FZ1        29 KWPVPYKRFEFRPKTDPYCQA-KYTFCPMGNGDGSIPVMKNEDIIQVYRLQAPVWEFKYGDLLGHFKIMHDAIGFRSSLT 107 western clawed ...
XP_007251755  36 DWPVPYKRFDRRPVTDPYCQA-LYPFCPTGDPDGRIPYMRDSDVISVFRLQTPVWEFKYGDLLGKFHIMHDAIGFSSSET 114 Mexican tetra
XP_005668529  50 QWPVPYKRFSFRPEPDPYCQA-KYTFCPTGSP---IPVMKDDDVIEVFRLQAPVWEFKYGDLLGHLKIMHDAIGFRSTLT 125 pig
XP_004081506  26 QWPVPYRRFDHRPTADSYCEA-LYPFCPTGDRDGRIPYMREDDVISVYRLQTPVWEFKYGDLLGKVHIMHDAIGFSSSHT 104 Japanese medaka
NP_001269123  33 RWPVPYRRFDFRPKSDPYCQA-RYTFCPTGSA---IPVMKEEDIIEVYRLQAPVWEFKYGDLLGHLKIMHDAVGFKSSLT 108 chicken
XP_009302855  29 VWPVPYKRVDKRPDVDPFCQA-LYPFCPTGDPAGQIPVMKESDLISIFRLQTPVWEFKYGDIMGKFHIMHDAVGFASANT 107 zebrafish
XP_003218725  19 gWPVPYRRFDYRPKTDPYCQA-QYTFCPTGFP---IPLMSDKDVLEVYRLQAPVWEFKVGDLFGRMKIMHDAVGFRSTLL 94  green anole
XP_011441884  26 QWPIPYRRYKSRPISNSYCKAgVIPFCPTGQIANSMPKFKPDDKVQLYALKKPVWQFKFGDTLGKFHIMHDALGISNLNT 105 Pacific oyster
XP_006639091   1 --------------------------------------MKDSDTIQVFRLQAPVWEFKYGDLLGKFDIMHDAIGFRSTLT 42  spotted gar
XP_005991311   1 --------------------------------------MKEEDTIEVFRLQAPVWEFKYGDLLGHFKIMHDAVGFRSSLT 42  coelacanth
XP_002600955   1 -WPVPYRRFDSRPKTDDFCEA-QFAFCPTGHPDGSMPKMMDSDVVEVYSMKAPVWEFKVGDLLAHFNIIHDAIGFRNKRT 78  Florida lancelet
Q28FZ1       108 GKNYTAEWYELFQLGNCTFPHLRPNMEEPFWCNQGAACFYEGIDDDHWKSNGTLVPVASMSGVMFNSMAKWIKEDNDTGI 187 western clawed ...
XP_007251755 115 GRNYTMEWYELFQLGNCTFPHLRKDTAAPFWCNQGAACFYEGIDDEHWRQNGTLEKVGEMSGEQFNNLARWVQEDNETGI 194 Mexican tetra
XP_005668529 126 DKNYTMEWYELFQLGNCTFPHLRPEMNAPFWCNQGAACFFEGIDDNHWKENGTLVLVATISGNMFNKMAQWVKQDNETGI 205 pig
XP_004081506 105 GANYTMEWYELFQLGNCTFPHLRQEAPAPFWCNQGAACFFEGIDDLHWSQNGTLEKIGEVTGSQFNHMAQWVQDDNRTGI 184 Japanese medaka
NP_001269123 109 GKNYTMEWYELFQLGNCTFPHLRPGMDAPFWCNQGAACFYEGIDDAHWKENGTLVLITKISGTMFNEMAKWVKYDNETGI 188 chicken
XP_009302855 108 GRNYTMEWYELFQLGNCTFPHEREGLSAPFWCNQGAACFYEGIDDIHWKQNGSLEKIGEISGKLFNEMARWVQEDNETGV 187 zebrafish
XP_003218725  95 GKNYTMEWYELFQLGNCTFPHLRANLSAPFWCNQGAACFYEGIDDAHWKENGTMVQVTTISGAVFNEMAKWVKYDNDTGI 174 green anole
XP_011441884 106 GMNYTMEWYELFQLFNCTFPHVVND--SLLWCNQGAACIYGGIEDRLWKENGTLQLVATTNGDVFNQFAEWVLWDNTTGL 183 Pacific oyster
XP_006639091  43 GRNYTMEWYELFQLGNCTFPHLRPELSAPFWCNHGAACFYEGIDDLHWKQYGTLEKVAEITGTQFNKMSEWVKQDNETGI 122 spotted gar
XP_005991311  43 HRNYTMEWYELFQLGNCTFPHLRPELETPFWCNQGAACFFEDIDDLHWKQNGSMIKVAEITGNVFNKMAKWVKEDNATGI 122 coelacanth
XP_002600955  79 GLNYTMEWYELFQLFNCTFGHVLTDMDPPLWCNQGAACLYDGIDDLHWSQNGSLVKVAEVSGKIFNEMADWVHTDNNTGI 158 Florida lancelet
Q28FZ1       188 YYQTWNVRASPEFNSSVWFDSYDCASFVLRTYQKLFELGATFNRKVQTNYTRLLLYSGEPAFLGNGTEIFGQHGNKSLAL 267 western clawed ...
XP_007251755 195 YYETWTVRSDPGLNSTTWFESYDCSQFVHRTYRKIKELGAKLSSRSQTNYTKIYLYSGEPTYLGDDDSIFGQSSMKALAT 274 Mexican tetra
XP_005668529 206 YYETWTVQASPEKGAETWFESYDCSKFVLRTYEKLAELGAEFK-KTETNYTRIFLYSGEPTYLGNETSVFGPTGNKTLAL 284 pig
XP_004081506 185 YYETWTVRSDPAPNSTVWFESYDCSQFVHRTYRKLKELGAKLSSRSPTYYTKIYLYSGEPTYLGNDSAIFGTPALQNLAA 264 Japanese medaka
NP_001269123 189 YYETWTVQASPDKKSVVWFDSYECSKFILRTYQKLADLGATFN-KIQTNYTSIILFSGEPIYLGNETSIFGPTGNKTLAA 267 chicken
XP_009302855 188 YYETWTVKSDSGANSTTWFDSYDCSQFVHRTYKKLMDLGTQLSSQTPLKYTKIYLYSGEPLYLGDD-SIFQQSSTKDLAA 266 zebrafish
XP_003218725 175 YYETWAVKDSPERNARVWFESYECSKFVLRTYQKLAELGAIFK-KIQTNYTTVTLFSGEPTYLGNETTIFGPHGNKTVAV 253 green anole
XP_011441884 184 YYETWTVRDKP--DGKMWFDSFDCASWVLRAFQEFGKLGVKFDQTVKLNYTRINLFSDMPKYLGNQSMVF---ANKTLGN 258 Pacific oyster
XP_006639091 123 YYETWTVQADPSPNTTVWFESYDCSKFVHRTYRKLADMGVTLKSTLQTNYTRIFLYSGQPSFLGNDTTIFGDGGVKSLAS 202 spotted gar
XP_005991311 123 YYETWTVEAAPSPNATVWFESYDCSRFVLRVYQKLAELGAAFNNKLQTNYTRIFLYSGEPTYLGNDTSIFGPRGNKTLAS 202 coelacanth
XP_002600955 159 YYETWMVRNSTGPDSKLWFEAFDCASFVIRTFDKLGELGAKFNTSVQTNYTKITLFSDQPVHLGNASTIYGPKGNKTLAA 238 Florida lancelet
Q28FZ1       268 DIRKFYFLLRPHQSWKELLLSILDIYYKVAVDKNFYFFYNFEYWYLPLKFPYIKVVYDEIPLP 330 western clawed frog
XP_007251755 275 DIREFYHSFQPHQSMIQFILSLMEAYKKVVLEKTFYLYYNFEYWHLPMKAPYIQITYEEVPLP 337 Mexican tetra
XP_005668529 285 AIKRFYYPFKPHLSTKEFLLSLLQIFDAVIIHRQFYLFYNFEYWFLPMKFPFIKITYEEIPLP 347 pig
XP_004081506 265 DIRKFYFTFRPHQSFVDFAFTLLEAYKKIVLDKTFYLYYNFEYWHLPMKYPYMQIVYEEVPLP 327 Japanese medaka
NP_001269123 268 AIRDFYYPFKPHKTVREFFVDLLKIIDRVILNHQFYLFYNLEYWFLPMKFPYLKVVYEEVPLP 330 chicken
XP_009302855 267 DIRQFYYSFRSHQSMVEMIKSLLEALEKMVVEKTFYFYYNSQYWKLPMKYPYLKITYEEIPFP 329 zebrafish
XP_003218725 254 AIRNFYSPFKPFRSVKEFFVNLLRIVDEVVLGHQFYLFYNLEYWFLPMKYPYMRIAYEEIPLP 316 green anole
XP_011441884 259 DIMKFYSKFQAHVAGPLLIEHLISALEEILIQNKFYFFYNEEYWFLPMKSPHVKLTYNEIPLP 321 Pacific oyster
XP_006639091 203 DIRSFFHSFQPHQSIKDFLLSLLEVYDRVVLEKSFYLYYNFEYWHLPMKPPYIRVTYEEIPLP 265 spotted gar
XP_005991311 203 DIKAFYYPFRPHQSLKEFLISLLEIYDEVILKKTFYLYYNFGYWLLPMKSPYIKILYEEIPLP 265 coelacanth
XP_002600955 239 EIRTFYEHFQAHQPFPSLLKSMLEAFDTIVLEKKWYFFYNFEYWFLPMKEPFIKLSYEEVPLP 301 Florida lancelet
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