1L8Y


Conserved Protein Domain Family
HMG_box_5
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pfam14887: HMG_box_5 (this model, PSSM-Id:291548 is obsolete and has been replaced by 434287)
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HMG (high mobility group) box 5
Nucleolar transcription factor/upstream binding factor contains six HMG box domains. This is the fifth HMG box domain in these proteins. This domain has lost DNA-binding ability.
Links
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Statistics
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PSSM-Id: 291548
Aligned: 4 rows
Threshold Bit Score: 142.573
Created: 16-Jul-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
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PubMed ReferencesClick to see Conserved Features Help
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
1L8Y_A         2 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT-NS 80  human
XP_005070155 442 GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAAT-NS 520 golden hamster
XP_004918638 397 AKLPETPKTAEEIWQQSVIGDYLARFKNDRAKALKCMEATWLNMEKKEKIMWIKKAAEDQKRYERELSDMRSAPTPT-TA 475 western clawed ...
CAF92109     484 SRLPDPPKTAQEIWQQSVIGDYMARFKSDRSKAQKAMEATWSNMEKKEKIMWIKKAAEDQKRYERELYEMRSPAAAAiAS 563 spotted green p...

1L8Y_A        81 SKKLE 85  human
XP_005070155 521 SKKMK 525 golden hamster
XP_004918638 476 GKKVK 480 western clawed frog
CAF92109     564 GKKMK 568 spotted green pufferfish
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